Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02845

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02840 and CSW01_02845 are separated by 267 nucleotidesCSW01_02845 and CSW01_02850 are separated by 383 nucleotides CSW01_02840: CSW01_02840 - DNA mismatch repair protein MutS, at 564,573 to 567,161 _02840 CSW01_02845: CSW01_02845 - cysteine synthase CysM, at 567,429 to 568,316 _02845 CSW01_02850: CSW01_02850 - sulfate ABC transporter substrate-binding protein, at 568,700 to 569,701 _02850 Position (kb) 567 568 569Strain fitness (log2 ratio) -2 -1 0 1at 566.476 kb on - strand, within CSW01_02840at 566.556 kb on + strand, within CSW01_02840at 566.564 kb on - strand, within CSW01_02840at 566.695 kb on - strand, within CSW01_02840at 566.780 kb on - strand, within CSW01_02840at 566.818 kb on + strand, within CSW01_02840at 566.818 kb on + strand, within CSW01_02840at 566.818 kb on + strand, within CSW01_02840at 566.826 kb on - strand, within CSW01_02840at 566.826 kb on - strand, within CSW01_02840at 566.828 kb on + strand, within CSW01_02840at 566.914 kb on + strandat 566.957 kb on - strandat 566.999 kb on + strandat 566.999 kb on + strandat 566.999 kb on + strandat 566.999 kb on + strandat 567.007 kb on - strandat 567.007 kb on - strandat 567.007 kb on - strandat 567.022 kb on + strandat 567.065 kb on - strandat 567.107 kb on + strandat 567.133 kb on - strandat 567.190 kb on + strandat 567.198 kb on - strandat 567.204 kb on - strandat 567.241 kb on + strandat 567.249 kb on - strandat 567.267 kb on - strandat 567.277 kb on + strandat 567.282 kb on - strandat 567.300 kb on + strandat 567.300 kb on + strandat 567.307 kb on + strandat 567.307 kb on + strandat 567.307 kb on + strandat 567.307 kb on + strandat 567.307 kb on + strandat 567.315 kb on - strandat 567.315 kb on - strandat 567.315 kb on - strandat 567.315 kb on - strandat 567.317 kb on + strandat 567.354 kb on - strandat 567.360 kb on - strandat 567.379 kb on + strandat 567.402 kb on + strandat 567.478 kb on + strandat 567.547 kb on - strand, within CSW01_02845at 567.582 kb on + strand, within CSW01_02845at 567.582 kb on + strand, within CSW01_02845at 567.712 kb on - strand, within CSW01_02845at 567.735 kb on - strand, within CSW01_02845at 567.874 kb on - strand, within CSW01_02845at 567.879 kb on - strand, within CSW01_02845at 567.879 kb on - strand, within CSW01_02845at 567.906 kb on + strand, within CSW01_02845at 567.927 kb on + strand, within CSW01_02845at 567.957 kb on + strand, within CSW01_02845at 567.965 kb on - strand, within CSW01_02845at 567.965 kb on - strand, within CSW01_02845at 567.965 kb on - strand, within CSW01_02845at 567.991 kb on - strand, within CSW01_02845at 568.002 kb on + strand, within CSW01_02845at 568.010 kb on - strand, within CSW01_02845at 568.019 kb on + strand, within CSW01_02845at 568.019 kb on + strand, within CSW01_02845at 568.061 kb on - strand, within CSW01_02845at 568.075 kb on + strand, within CSW01_02845at 568.088 kb on - strand, within CSW01_02845at 568.141 kb on - strand, within CSW01_02845at 568.180 kb on + strand, within CSW01_02845at 568.180 kb on + strand, within CSW01_02845at 568.180 kb on + strand, within CSW01_02845at 568.188 kb on - strand, within CSW01_02845at 568.188 kb on - strand, within CSW01_02845at 568.232 kb on + strandat 568.241 kb on + strandat 568.246 kb on + strandat 568.246 kb on + strandat 568.254 kb on - strandat 568.274 kb on - strandat 568.292 kb on + strandat 568.292 kb on + strandat 568.298 kb on - strandat 568.300 kb on - strandat 568.300 kb on - strandat 568.308 kb on + strandat 568.318 kb on + strandat 568.365 kb on - strandat 568.441 kb on + strandat 568.474 kb on + strandat 568.567 kb on - strandat 568.653 kb on + strandat 568.653 kb on + strandat 568.653 kb on + strandat 568.800 kb on + strandat 568.818 kb on - strand, within CSW01_02850at 568.818 kb on - strand, within CSW01_02850at 568.818 kb on - strand, within CSW01_02850at 568.832 kb on - strand, within CSW01_02850at 568.880 kb on - strand, within CSW01_02850at 568.880 kb on - strand, within CSW01_02850at 568.909 kb on - strand, within CSW01_02850at 568.919 kb on + strand, within CSW01_02850at 568.988 kb on + strand, within CSW01_02850at 569.087 kb on - strand, within CSW01_02850at 569.158 kb on - strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.183 kb on + strand, within CSW01_02850at 569.191 kb on - strand, within CSW01_02850at 569.191 kb on - strand, within CSW01_02850at 569.215 kb on + strand, within CSW01_02850at 569.215 kb on + strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.223 kb on - strand, within CSW01_02850at 569.228 kb on - strand, within CSW01_02850at 569.280 kb on - strand, within CSW01_02850

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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566,476 - CSW01_02840 0.74 -0.8
566,556 + CSW01_02840 0.77 +0.4
566,564 - CSW01_02840 0.77 -2.1
566,695 - CSW01_02840 0.82 -0.2
566,780 - CSW01_02840 0.85 +0.4
566,818 + CSW01_02840 0.87 -0.2
566,818 + CSW01_02840 0.87 +0.1
566,818 + CSW01_02840 0.87 -0.5
566,826 - CSW01_02840 0.87 -0.7
566,826 - CSW01_02840 0.87 +0.1
566,828 + CSW01_02840 0.87 +0.1
566,914 + +0.4
566,957 - -0.1
566,999 + -0.0
566,999 + +0.1
566,999 + -0.7
566,999 + +0.8
567,007 - +0.4
567,007 - -0.6
567,007 - -0.1
567,022 + -0.1
567,065 - +0.4
567,107 + +0.5
567,133 - -0.3
567,190 + +0.4
567,198 - -0.2
567,204 - +1.4
567,241 + +0.6
567,249 - +0.3
567,267 - +0.4
567,277 + +0.2
567,282 - -0.1
567,300 + -0.4
567,300 + +0.4
567,307 + +0.6
567,307 + +0.6
567,307 + +0.2
567,307 + +0.4
567,307 + +0.9
567,315 - +0.7
567,315 - +0.4
567,315 - -0.0
567,315 - +0.6
567,317 + -0.3
567,354 - -0.3
567,360 - -0.4
567,379 + +0.4
567,402 + -1.9
567,478 + +0.9
567,547 - CSW01_02845 0.13 -0.5
567,582 + CSW01_02845 0.17 +0.0
567,582 + CSW01_02845 0.17 -0.1
567,712 - CSW01_02845 0.32 -1.2
567,735 - CSW01_02845 0.34 -0.7
567,874 - CSW01_02845 0.50 +1.5
567,879 - CSW01_02845 0.51 +0.4
567,879 - CSW01_02845 0.51 -0.8
567,906 + CSW01_02845 0.54 -0.8
567,927 + CSW01_02845 0.56 +0.3
567,957 + CSW01_02845 0.59 -1.5
567,965 - CSW01_02845 0.60 +0.1
567,965 - CSW01_02845 0.60 -1.3
567,965 - CSW01_02845 0.60 +1.1
567,991 - CSW01_02845 0.63 -1.6
568,002 + CSW01_02845 0.65 +0.5
568,010 - CSW01_02845 0.65 -1.1
568,019 + CSW01_02845 0.66 -0.3
568,019 + CSW01_02845 0.66 -0.1
568,061 - CSW01_02845 0.71 -0.2
568,075 + CSW01_02845 0.73 +0.3
568,088 - CSW01_02845 0.74 -0.4
568,141 - CSW01_02845 0.80 -0.0
568,180 + CSW01_02845 0.85 +0.4
568,180 + CSW01_02845 0.85 -0.3
568,180 + CSW01_02845 0.85 +0.2
568,188 - CSW01_02845 0.85 +0.3
568,188 - CSW01_02845 0.85 -0.3
568,232 + +0.2
568,241 + +0.1
568,246 + -0.6
568,246 + +0.1
568,254 - +0.7
568,274 - +0.2
568,292 + -0.2
568,292 + -0.2
568,298 - -2.3
568,300 - +0.5
568,300 - +0.0
568,308 + +0.1
568,318 + -0.1
568,365 - +0.2
568,441 + +0.4
568,474 + -0.6
568,567 - -0.2
568,653 + -0.0
568,653 + -0.3
568,653 + -0.1
568,800 + -1.1
568,818 - CSW01_02850 0.12 +0.1
568,818 - CSW01_02850 0.12 +1.7
568,818 - CSW01_02850 0.12 -1.1
568,832 - CSW01_02850 0.13 +0.7
568,880 - CSW01_02850 0.18 +1.3
568,880 - CSW01_02850 0.18 +0.4
568,909 - CSW01_02850 0.21 -0.7
568,919 + CSW01_02850 0.22 +0.4
568,988 + CSW01_02850 0.29 +0.5
569,087 - CSW01_02850 0.39 -0.4
569,158 - CSW01_02850 0.46 -0.3
569,183 + CSW01_02850 0.48 +0.4
569,183 + CSW01_02850 0.48 -0.5
569,183 + CSW01_02850 0.48 -0.0
569,183 + CSW01_02850 0.48 +0.1
569,191 - CSW01_02850 0.49 +0.4
569,191 - CSW01_02850 0.49 -0.7
569,215 + CSW01_02850 0.51 -0.6
569,215 + CSW01_02850 0.51 +0.7
569,223 - CSW01_02850 0.52 -0.1
569,223 - CSW01_02850 0.52 +0.3
569,223 - CSW01_02850 0.52 -1.1
569,228 - CSW01_02850 0.53 -1.4
569,280 - CSW01_02850 0.58 -0.3

Or see this region's nucleotide sequence