Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01365 and CSW01_01370 are separated by 261 nucleotides CSW01_01370 and CSW01_01375 are separated by 54 nucleotides CSW01_01375 and CSW01_01380 overlap by 1 nucleotides
CSW01_01365: CSW01_01365 - MBL fold hydrolase, at 267,808 to 269,175
_01365
CSW01_01370: CSW01_01370 - mechanosensitive ion channel family protein, at 269,437 to 270,675
_01370
CSW01_01375: CSW01_01375 - IclR family transcriptional regulator, at 270,730 to 271,302
_01375
CSW01_01380: CSW01_01380 - D-2-hydroxyacid dehydrogenase, at 271,302 to 272,225
_01380
Position (kb) 269
270
271 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 268.455 kb on + strand, within CSW01_01365 at 268.455 kb on + strand, within CSW01_01365 at 268.460 kb on + strand, within CSW01_01365 at 268.460 kb on + strand, within CSW01_01365 at 268.462 kb on + strand, within CSW01_01365 at 268.462 kb on + strand, within CSW01_01365 at 268.462 kb on + strand, within CSW01_01365 at 268.465 kb on + strand, within CSW01_01365 at 268.465 kb on + strand, within CSW01_01365 at 268.465 kb on + strand, within CSW01_01365 at 268.468 kb on - strand, within CSW01_01365 at 268.468 kb on - strand, within CSW01_01365 at 268.472 kb on + strand, within CSW01_01365 at 268.478 kb on - strand, within CSW01_01365 at 268.478 kb on - strand, within CSW01_01365 at 268.480 kb on - strand, within CSW01_01365 at 268.480 kb on - strand, within CSW01_01365 at 268.480 kb on - strand, within CSW01_01365 at 268.480 kb on - strand, within CSW01_01365 at 268.572 kb on + strand, within CSW01_01365 at 268.577 kb on + strand, within CSW01_01365 at 268.577 kb on + strand, within CSW01_01365 at 268.590 kb on + strand, within CSW01_01365 at 268.673 kb on + strand, within CSW01_01365 at 268.705 kb on + strand, within CSW01_01365 at 268.744 kb on - strand, within CSW01_01365 at 268.746 kb on + strand, within CSW01_01365 at 268.746 kb on + strand, within CSW01_01365 at 268.746 kb on + strand, within CSW01_01365 at 268.746 kb on + strand, within CSW01_01365 at 268.748 kb on + strand, within CSW01_01365 at 268.748 kb on + strand, within CSW01_01365 at 268.754 kb on - strand, within CSW01_01365 at 268.754 kb on - strand, within CSW01_01365 at 268.754 kb on - strand, within CSW01_01365 at 268.754 kb on - strand, within CSW01_01365 at 268.754 kb on - strand, within CSW01_01365 at 268.754 kb on - strand, within CSW01_01365 at 268.756 kb on - strand, within CSW01_01365 at 268.756 kb on - strand, within CSW01_01365 at 268.793 kb on + strand, within CSW01_01365 at 268.798 kb on + strand, within CSW01_01365 at 268.842 kb on + strand, within CSW01_01365 at 268.898 kb on - strand, within CSW01_01365 at 268.925 kb on - strand, within CSW01_01365 at 268.936 kb on + strand, within CSW01_01365 at 268.944 kb on - strand, within CSW01_01365 at 268.946 kb on + strand, within CSW01_01365 at 268.956 kb on - strand, within CSW01_01365 at 268.956 kb on - strand, within CSW01_01365 at 268.973 kb on + strand, within CSW01_01365 at 268.973 kb on + strand, within CSW01_01365 at 268.973 kb on + strand, within CSW01_01365 at 268.973 kb on + strand, within CSW01_01365 at 269.098 kb on + strand at 269.106 kb on - strand at 269.111 kb on + strand at 269.138 kb on + strand at 269.176 kb on + strand at 269.191 kb on - strand at 269.215 kb on - strand at 269.219 kb on + strand at 269.249 kb on - strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.297 kb on + strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.305 kb on - strand at 269.330 kb on + strand at 269.334 kb on - strand at 269.336 kb on - strand at 269.375 kb on + strand at 269.398 kb on - strand at 269.410 kb on - strand at 269.433 kb on + strand at 269.435 kb on + strand at 269.435 kb on + strand at 269.440 kb on + strand at 269.441 kb on - strand at 269.441 kb on - strand at 269.448 kb on - strand at 269.490 kb on + strand at 269.490 kb on + strand at 269.490 kb on + strand at 269.490 kb on + strand at 269.498 kb on - strand at 269.498 kb on - strand at 269.498 kb on - strand at 269.498 kb on - strand at 269.498 kb on - strand at 269.498 kb on - strand at 269.543 kb on + strand at 269.553 kb on - strand at 269.579 kb on + strand, within CSW01_01370 at 269.581 kb on + strand, within CSW01_01370 at 269.653 kb on + strand, within CSW01_01370 at 269.781 kb on - strand, within CSW01_01370 at 269.833 kb on + strand, within CSW01_01370 at 269.841 kb on - strand, within CSW01_01370 at 269.881 kb on + strand, within CSW01_01370 at 269.915 kb on - strand, within CSW01_01370 at 269.983 kb on + strand, within CSW01_01370 at 269.983 kb on + strand, within CSW01_01370 at 270.001 kb on + strand, within CSW01_01370 at 270.014 kb on - strand, within CSW01_01370 at 270.058 kb on + strand, within CSW01_01370 at 270.164 kb on - strand, within CSW01_01370 at 270.172 kb on - strand, within CSW01_01370 at 270.240 kb on + strand, within CSW01_01370 at 270.248 kb on - strand, within CSW01_01370 at 270.248 kb on - strand, within CSW01_01370 at 270.288 kb on + strand, within CSW01_01370 at 270.298 kb on + strand, within CSW01_01370 at 270.298 kb on + strand, within CSW01_01370 at 270.324 kb on - strand, within CSW01_01370 at 270.365 kb on + strand, within CSW01_01370 at 270.366 kb on + strand, within CSW01_01370 at 270.366 kb on + strand, within CSW01_01370 at 270.366 kb on + strand, within CSW01_01370 at 270.366 kb on + strand, within CSW01_01370 at 270.367 kb on + strand, within CSW01_01370 at 270.367 kb on + strand, within CSW01_01370 at 270.367 kb on + strand, within CSW01_01370 at 270.373 kb on + strand, within CSW01_01370 at 270.374 kb on - strand, within CSW01_01370 at 270.374 kb on - strand, within CSW01_01370 at 270.374 kb on - strand, within CSW01_01370 at 270.374 kb on - strand, within CSW01_01370 at 270.374 kb on - strand, within CSW01_01370 at 270.376 kb on + strand, within CSW01_01370 at 270.376 kb on + strand, within CSW01_01370 at 270.384 kb on - strand, within CSW01_01370 at 270.384 kb on - strand, within CSW01_01370 at 270.384 kb on - strand, within CSW01_01370 at 270.398 kb on + strand, within CSW01_01370 at 270.407 kb on - strand, within CSW01_01370 at 270.451 kb on - strand, within CSW01_01370 at 270.451 kb on - strand, within CSW01_01370 at 270.479 kb on + strand, within CSW01_01370 at 270.487 kb on - strand, within CSW01_01370 at 270.487 kb on - strand, within CSW01_01370 at 270.505 kb on + strand, within CSW01_01370 at 270.538 kb on + strand, within CSW01_01370 at 270.538 kb on + strand, within CSW01_01370 at 270.546 kb on - strand, within CSW01_01370 at 270.546 kb on - strand, within CSW01_01370 at 270.554 kb on - strand at 270.554 kb on - strand at 270.615 kb on + strand at 270.652 kb on + strand at 270.652 kb on + strand at 270.657 kb on + strand at 270.666 kb on - strand at 270.677 kb on + strand at 270.677 kb on + strand at 270.717 kb on + strand at 270.717 kb on + strand at 270.738 kb on + strand at 270.756 kb on + strand at 270.775 kb on + strand at 270.785 kb on + strand at 270.804 kb on + strand, within CSW01_01375 at 270.811 kb on + strand, within CSW01_01375 at 270.820 kb on - strand, within CSW01_01375 at 270.838 kb on + strand, within CSW01_01375 at 270.844 kb on + strand, within CSW01_01375 at 270.844 kb on + strand, within CSW01_01375 at 270.859 kb on + strand, within CSW01_01375 at 270.868 kb on + strand, within CSW01_01375 at 270.883 kb on + strand, within CSW01_01375 at 270.903 kb on - strand, within CSW01_01375 at 270.919 kb on - strand, within CSW01_01375 at 270.940 kb on - strand, within CSW01_01375 at 270.966 kb on + strand, within CSW01_01375 at 270.985 kb on + strand, within CSW01_01375 at 270.993 kb on - strand, within CSW01_01375 at 270.998 kb on - strand, within CSW01_01375 at 270.998 kb on - strand, within CSW01_01375 at 271.000 kb on + strand, within CSW01_01375 at 271.008 kb on - strand, within CSW01_01375 at 271.059 kb on + strand, within CSW01_01375 at 271.084 kb on + strand, within CSW01_01375 at 271.092 kb on - strand, within CSW01_01375 at 271.149 kb on + strand, within CSW01_01375 at 271.149 kb on + strand, within CSW01_01375 at 271.149 kb on + strand, within CSW01_01375 at 271.157 kb on - strand, within CSW01_01375 at 271.157 kb on - strand, within CSW01_01375 at 271.187 kb on - strand, within CSW01_01375 at 271.200 kb on - strand, within CSW01_01375 at 271.245 kb on + strand at 271.250 kb on - strand at 271.261 kb on - strand at 271.262 kb on + strand at 271.263 kb on - strand at 271.265 kb on + strand at 271.270 kb on - strand at 271.271 kb on - strand at 271.273 kb on - strand at 271.328 kb on + strand at 271.409 kb on - strand, within CSW01_01380 at 271.421 kb on + strand, within CSW01_01380 at 271.429 kb on - strand, within CSW01_01380 at 271.443 kb on + strand, within CSW01_01380 at 271.461 kb on - strand, within CSW01_01380 at 271.506 kb on + strand, within CSW01_01380 at 271.536 kb on + strand, within CSW01_01380 at 271.544 kb on - strand, within CSW01_01380 at 271.567 kb on + strand, within CSW01_01380 at 271.567 kb on + strand, within CSW01_01380 at 271.575 kb on - strand, within CSW01_01380 at 271.622 kb on - strand, within CSW01_01380 at 271.636 kb on + strand, within CSW01_01380 at 271.636 kb on + strand, within CSW01_01380 at 271.636 kb on + strand, within CSW01_01380 at 271.636 kb on + strand, within CSW01_01380 at 271.636 kb on + strand, within CSW01_01380 at 271.644 kb on - strand, within CSW01_01380 at 271.644 kb on - strand, within CSW01_01380 at 271.644 kb on - strand, within CSW01_01380
Per-strain Table
Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B remove 268,455 + CSW01_01365 0.47 +1.0 268,455 + CSW01_01365 0.47 -2.9 268,460 + CSW01_01365 0.48 +0.4 268,460 + CSW01_01365 0.48 -0.5 268,462 + CSW01_01365 0.48 +0.9 268,462 + CSW01_01365 0.48 -0.1 268,462 + CSW01_01365 0.48 +2.1 268,465 + CSW01_01365 0.48 +0.1 268,465 + CSW01_01365 0.48 +0.3 268,465 + CSW01_01365 0.48 +0.1 268,468 - CSW01_01365 0.48 +0.2 268,468 - CSW01_01365 0.48 +0.5 268,472 + CSW01_01365 0.49 -0.1 268,478 - CSW01_01365 0.49 +0.6 268,478 - CSW01_01365 0.49 -0.0 268,480 - CSW01_01365 0.49 -1.5 268,480 - CSW01_01365 0.49 +0.3 268,480 - CSW01_01365 0.49 -0.6 268,480 - CSW01_01365 0.49 +0.2 268,572 + CSW01_01365 0.56 -0.1 268,577 + CSW01_01365 0.56 -0.1 268,577 + CSW01_01365 0.56 -0.1 268,590 + CSW01_01365 0.57 -0.9 268,673 + CSW01_01365 0.63 -0.1 268,705 + CSW01_01365 0.66 +0.2 268,744 - CSW01_01365 0.68 +0.0 268,746 + CSW01_01365 0.69 -1.4 268,746 + CSW01_01365 0.69 -0.4 268,746 + CSW01_01365 0.69 +0.1 268,746 + CSW01_01365 0.69 -0.2 268,748 + CSW01_01365 0.69 -0.3 268,748 + CSW01_01365 0.69 +0.3 268,754 - CSW01_01365 0.69 -0.4 268,754 - CSW01_01365 0.69 -0.3 268,754 - CSW01_01365 0.69 +0.0 268,754 - CSW01_01365 0.69 -0.0 268,754 - CSW01_01365 0.69 -0.1 268,754 - CSW01_01365 0.69 +0.0 268,756 - CSW01_01365 0.69 +0.1 268,756 - CSW01_01365 0.69 -0.2 268,793 + CSW01_01365 0.72 -0.4 268,798 + CSW01_01365 0.72 +0.4 268,842 + CSW01_01365 0.76 +0.4 268,898 - CSW01_01365 0.80 -0.2 268,925 - CSW01_01365 0.82 -0.2 268,936 + CSW01_01365 0.82 +0.4 268,944 - CSW01_01365 0.83 -1.6 268,946 + CSW01_01365 0.83 -0.4 268,956 - CSW01_01365 0.84 +0.4 268,956 - CSW01_01365 0.84 -0.4 268,973 + CSW01_01365 0.85 +1.2 268,973 + CSW01_01365 0.85 -0.1 268,973 + CSW01_01365 0.85 -1.9 268,973 + CSW01_01365 0.85 -0.1 269,098 + -0.4 269,106 - +0.2 269,111 + -0.2 269,138 + +0.4 269,176 + -0.5 269,191 - -0.3 269,215 - +0.7 269,219 + +0.1 269,249 - +0.1 269,297 + -1.0 269,297 + +0.2 269,297 + +0.4 269,297 + -0.5 269,297 + -0.3 269,297 + -0.7 269,297 + -0.5 269,297 + -0.1 269,305 - +0.2 269,305 - +0.2 269,305 - +0.4 269,305 - +0.2 269,305 - -0.6 269,305 - -0.2 269,305 - -0.8 269,305 - -1.6 269,330 + -0.4 269,334 - +0.3 269,336 - +1.4 269,375 + -0.2 269,398 - +0.7 269,410 - -0.5 269,433 + +0.4 269,435 + -0.3 269,435 + -0.3 269,440 + +0.5 269,441 - +0.0 269,441 - -0.1 269,448 - -0.0 269,490 + -0.4 269,490 + -1.7 269,490 + +0.4 269,490 + -0.2 269,498 - -0.7 269,498 - +0.3 269,498 - -0.2 269,498 - -0.6 269,498 - -0.4 269,498 - +1.2 269,543 + +0.6 269,553 - -0.2 269,579 + CSW01_01370 0.11 -0.9 269,581 + CSW01_01370 0.12 +0.8 269,653 + CSW01_01370 0.17 +0.8 269,781 - CSW01_01370 0.28 +0.3 269,833 + CSW01_01370 0.32 +0.1 269,841 - CSW01_01370 0.33 -0.1 269,881 + CSW01_01370 0.36 +0.6 269,915 - CSW01_01370 0.39 +0.2 269,983 + CSW01_01370 0.44 +0.6 269,983 + CSW01_01370 0.44 -0.4 270,001 + CSW01_01370 0.46 -1.5 270,014 - CSW01_01370 0.47 +0.1 270,058 + CSW01_01370 0.50 -0.4 270,164 - CSW01_01370 0.59 -0.2 270,172 - CSW01_01370 0.59 -0.8 270,240 + CSW01_01370 0.65 -0.0 270,248 - CSW01_01370 0.65 +0.5 270,248 - CSW01_01370 0.65 +0.3 270,288 + CSW01_01370 0.69 +0.2 270,298 + CSW01_01370 0.69 -0.1 270,298 + CSW01_01370 0.69 +1.3 270,324 - CSW01_01370 0.72 +0.0 270,365 + CSW01_01370 0.75 -1.8 270,366 + CSW01_01370 0.75 -0.3 270,366 + CSW01_01370 0.75 -0.4 270,366 + CSW01_01370 0.75 +0.1 270,366 + CSW01_01370 0.75 +0.3 270,367 + CSW01_01370 0.75 -0.0 270,367 + CSW01_01370 0.75 +0.2 270,367 + CSW01_01370 0.75 +0.4 270,373 + CSW01_01370 0.76 -1.1 270,374 - CSW01_01370 0.76 -1.1 270,374 - CSW01_01370 0.76 +0.5 270,374 - CSW01_01370 0.76 -0.3 270,374 - CSW01_01370 0.76 +0.5 270,374 - CSW01_01370 0.76 -0.2 270,376 + CSW01_01370 0.76 +0.9 270,376 + CSW01_01370 0.76 -0.1 270,384 - CSW01_01370 0.76 -0.8 270,384 - CSW01_01370 0.76 -0.4 270,384 - CSW01_01370 0.76 -1.1 270,398 + CSW01_01370 0.78 +0.3 270,407 - CSW01_01370 0.78 -0.2 270,451 - CSW01_01370 0.82 +0.2 270,451 - CSW01_01370 0.82 -0.1 270,479 + CSW01_01370 0.84 -0.4 270,487 - CSW01_01370 0.85 -0.8 270,487 - CSW01_01370 0.85 +0.3 270,505 + CSW01_01370 0.86 -1.0 270,538 + CSW01_01370 0.89 -0.2 270,538 + CSW01_01370 0.89 -0.2 270,546 - CSW01_01370 0.90 +2.0 270,546 - CSW01_01370 0.90 +1.3 270,554 - -0.5 270,554 - -0.5 270,615 + -0.6 270,652 + +0.4 270,652 + -0.6 270,657 + +0.2 270,666 - +0.0 270,677 + -0.2 270,677 + +0.1 270,717 + +1.0 270,717 + -0.4 270,738 + +0.4 270,756 + +1.4 270,775 + -0.0 270,785 + -0.1 270,804 + CSW01_01375 0.13 +0.5 270,811 + CSW01_01375 0.14 +0.3 270,820 - CSW01_01375 0.16 +0.5 270,838 + CSW01_01375 0.19 +0.5 270,844 + CSW01_01375 0.20 +0.3 270,844 + CSW01_01375 0.20 +0.1 270,859 + CSW01_01375 0.23 -0.1 270,868 + CSW01_01375 0.24 -0.5 270,883 + CSW01_01375 0.27 -0.4 270,903 - CSW01_01375 0.30 -0.3 270,919 - CSW01_01375 0.33 +0.7 270,940 - CSW01_01375 0.37 -1.1 270,966 + CSW01_01375 0.41 -1.0 270,985 + CSW01_01375 0.45 +0.1 270,993 - CSW01_01375 0.46 -0.1 270,998 - CSW01_01375 0.47 -0.2 270,998 - CSW01_01375 0.47 +0.4 271,000 + CSW01_01375 0.47 -0.1 271,008 - CSW01_01375 0.49 +0.7 271,059 + CSW01_01375 0.57 +0.2 271,084 + CSW01_01375 0.62 -0.1 271,092 - CSW01_01375 0.63 -0.5 271,149 + CSW01_01375 0.73 +0.2 271,149 + CSW01_01375 0.73 +0.3 271,149 + CSW01_01375 0.73 -1.1 271,157 - CSW01_01375 0.75 +2.4 271,157 - CSW01_01375 0.75 +0.8 271,187 - CSW01_01375 0.80 -0.0 271,200 - CSW01_01375 0.82 -0.2 271,245 + +0.4 271,250 - -0.1 271,261 - -0.5 271,262 + +0.1 271,263 - -0.0 271,265 + +0.7 271,270 - -0.1 271,271 - -0.4 271,273 - +0.4 271,328 + -0.6 271,409 - CSW01_01380 0.12 +0.0 271,421 + CSW01_01380 0.13 -0.8 271,429 - CSW01_01380 0.14 +0.2 271,443 + CSW01_01380 0.15 -0.9 271,461 - CSW01_01380 0.17 -0.6 271,506 + CSW01_01380 0.22 -0.5 271,536 + CSW01_01380 0.25 -0.0 271,544 - CSW01_01380 0.26 -0.1 271,567 + CSW01_01380 0.29 -0.5 271,567 + CSW01_01380 0.29 -0.2 271,575 - CSW01_01380 0.30 -0.6 271,622 - CSW01_01380 0.35 -0.0 271,636 + CSW01_01380 0.36 -0.6 271,636 + CSW01_01380 0.36 -0.4 271,636 + CSW01_01380 0.36 +0.5 271,636 + CSW01_01380 0.36 +0.8 271,636 + CSW01_01380 0.36 +0.7 271,644 - CSW01_01380 0.37 -0.8 271,644 - CSW01_01380 0.37 +0.4 271,644 - CSW01_01380 0.37 +0.3
Or see this region's nucleotide sequence