Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01330

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_01320 and CSW01_01325 are separated by 69 nucleotidesCSW01_01325 and CSW01_01330 are separated by 99 nucleotidesCSW01_01330 and CSW01_01335 are separated by 147 nucleotides CSW01_01320: CSW01_01320 - acyl-CoA reductase, at 257,293 to 259,770 _01320 CSW01_01325: CSW01_01325 - acetyltransferase, at 259,840 to 260,406 _01325 CSW01_01330: CSW01_01330 - oxidoreductase, at 260,506 to 260,646 _01330 CSW01_01335: CSW01_01335 - ISAs1 family transposase, at 260,794 to 261,921 _01335 Position (kb) 260 261Strain fitness (log2 ratio) -1 0 1 2at 259.572 kb on - strandat 259.582 kb on - strandat 259.658 kb on - strandat 259.658 kb on - strandat 259.658 kb on - strandat 259.670 kb on + strandat 259.670 kb on + strandat 259.723 kb on - strandat 259.736 kb on - strandat 259.736 kb on - strandat 259.751 kb on + strandat 259.763 kb on - strandat 259.771 kb on + strandat 259.772 kb on - strandat 259.870 kb on - strandat 259.926 kb on + strand, within CSW01_01325at 259.968 kb on + strand, within CSW01_01325at 260.037 kb on - strand, within CSW01_01325at 260.045 kb on - strand, within CSW01_01325at 260.450 kb on - strandat 260.623 kb on + strand, within CSW01_01330at 260.629 kb on + strand, within CSW01_01330at 260.662 kb on - strandat 260.702 kb on + strandat 260.765 kb on - strandat 260.868 kb on - strandat 260.897 kb on + strandat 260.922 kb on - strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 260.985 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.086 kb on + strand, within CSW01_01335at 261.094 kb on - strand, within CSW01_01335at 261.094 kb on - strand, within CSW01_01335at 261.148 kb on - strand, within CSW01_01335at 261.151 kb on - strand, within CSW01_01335at 261.196 kb on - strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.286 kb on + strand, within CSW01_01335at 261.294 kb on - strand, within CSW01_01335at 261.393 kb on + strand, within CSW01_01335at 261.617 kb on - strand, within CSW01_01335

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
remove
259,572 - -0.8
259,582 - +1.1
259,658 - +1.5
259,658 - +0.1
259,658 - +1.0
259,670 + +0.3
259,670 + +0.4
259,723 - +0.5
259,736 - +0.8
259,736 - +0.2
259,751 + -0.4
259,763 - +0.4
259,771 + +0.2
259,772 - +0.7
259,870 - +0.4
259,926 + CSW01_01325 0.15 +0.3
259,968 + CSW01_01325 0.23 +0.9
260,037 - CSW01_01325 0.35 -0.6
260,045 - CSW01_01325 0.36 +0.5
260,450 - -0.8
260,623 + CSW01_01330 0.83 -0.4
260,629 + CSW01_01330 0.87 -0.2
260,662 - +1.4
260,702 + -1.4
260,765 - -1.0
260,868 - -0.0
260,897 + +0.4
260,922 - CSW01_01335 0.11 -0.1
260,985 + CSW01_01335 0.17 +0.9
260,985 + CSW01_01335 0.17 +0.1
260,985 + CSW01_01335 0.17 +0.2
261,086 + CSW01_01335 0.26 -0.6
261,086 + CSW01_01335 0.26 +2.4
261,086 + CSW01_01335 0.26 -0.3
261,086 + CSW01_01335 0.26 -0.2
261,086 + CSW01_01335 0.26 -0.0
261,094 - CSW01_01335 0.27 -0.4
261,094 - CSW01_01335 0.27 +0.5
261,148 - CSW01_01335 0.31 +1.0
261,151 - CSW01_01335 0.32 +2.0
261,196 - CSW01_01335 0.36 +2.0
261,286 + CSW01_01335 0.44 -0.5
261,286 + CSW01_01335 0.44 +0.5
261,294 - CSW01_01335 0.44 +0.7
261,393 + CSW01_01335 0.53 -0.9
261,617 - CSW01_01335 0.73 +0.5

Or see this region's nucleotide sequence