Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00430

Experiment: LB_0.5%bileacids_aerobic_120MIN_ZN11B

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00420 and CSW01_00425 are separated by 75 nucleotidesCSW01_00425 and CSW01_00430 are separated by 132 nucleotidesCSW01_00430 and CSW01_00435 overlap by 4 nucleotides CSW01_00420: CSW01_00420 - ferritin, at 76,801 to 77,328 _00420 CSW01_00425: CSW01_00425 - universal stress protein B, at 77,404 to 77,727 _00425 CSW01_00430: CSW01_00430 - NAD(P)/FAD-dependent oxidoreductase, at 77,860 to 79,056 _00430 CSW01_00435: CSW01_00435 - EamA/RhaT family transporter, at 79,053 to 79,964 _00435 Position (kb) 77 78 79 80Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 76.897 kb on + strand, within CSW01_00420at 76.923 kb on - strand, within CSW01_00420at 76.931 kb on - strand, within CSW01_00420at 76.976 kb on - strand, within CSW01_00420at 77.006 kb on + strand, within CSW01_00420at 77.049 kb on + strand, within CSW01_00420at 77.129 kb on + strand, within CSW01_00420at 77.130 kb on - strand, within CSW01_00420at 77.137 kb on - strand, within CSW01_00420at 77.146 kb on + strand, within CSW01_00420at 77.171 kb on + strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.179 kb on - strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.181 kb on + strand, within CSW01_00420at 77.189 kb on - strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.219 kb on + strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.227 kb on - strand, within CSW01_00420at 77.387 kb on - strandat 77.395 kb on - strandat 77.429 kb on - strandat 77.474 kb on - strand, within CSW01_00425at 77.515 kb on - strand, within CSW01_00425at 77.546 kb on + strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.565 kb on - strand, within CSW01_00425at 77.606 kb on + strand, within CSW01_00425at 77.614 kb on - strand, within CSW01_00425at 77.657 kb on + strand, within CSW01_00425at 77.657 kb on - strand, within CSW01_00425at 77.695 kb on + strandat 77.697 kb on - strandat 77.703 kb on - strandat 77.703 kb on - strandat 77.781 kb on - strandat 77.816 kb on + strandat 77.823 kb on + strandat 77.824 kb on - strandat 77.824 kb on - strandat 77.866 kb on + strandat 77.879 kb on - strandat 77.914 kb on + strandat 77.914 kb on + strandat 77.914 kb on + strandat 77.927 kb on - strandat 77.932 kb on - strandat 77.932 kb on - strandat 77.954 kb on + strandat 78.067 kb on + strand, within CSW01_00430at 78.145 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.146 kb on + strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.154 kb on - strand, within CSW01_00430at 78.182 kb on - strand, within CSW01_00430at 78.182 kb on - strand, within CSW01_00430at 78.208 kb on + strand, within CSW01_00430at 78.221 kb on + strand, within CSW01_00430at 78.228 kb on - strand, within CSW01_00430at 78.231 kb on + strand, within CSW01_00430at 78.232 kb on - strand, within CSW01_00430at 78.259 kb on - strand, within CSW01_00430at 78.269 kb on + strand, within CSW01_00430at 78.273 kb on + strand, within CSW01_00430at 78.277 kb on - strand, within CSW01_00430at 78.279 kb on - strand, within CSW01_00430at 78.281 kb on - strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.290 kb on + strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.298 kb on - strand, within CSW01_00430at 78.339 kb on + strand, within CSW01_00430at 78.418 kb on + strand, within CSW01_00430at 78.439 kb on + strand, within CSW01_00430at 78.439 kb on + strand, within CSW01_00430at 78.439 kb on + strand, within CSW01_00430at 78.447 kb on - strand, within CSW01_00430at 78.470 kb on + strand, within CSW01_00430at 78.489 kb on + strand, within CSW01_00430at 78.539 kb on + strand, within CSW01_00430at 78.550 kb on + strand, within CSW01_00430at 78.664 kb on + strand, within CSW01_00430at 78.800 kb on + strand, within CSW01_00430at 78.800 kb on + strand, within CSW01_00430at 78.800 kb on + strand, within CSW01_00430at 78.820 kb on + strand, within CSW01_00430at 78.820 kb on + strand, within CSW01_00430at 78.820 kb on + strand, within CSW01_00430at 78.825 kb on + strand, within CSW01_00430at 78.828 kb on - strand, within CSW01_00430at 78.828 kb on - strand, within CSW01_00430at 78.830 kb on + strand, within CSW01_00430at 78.830 kb on + strand, within CSW01_00430at 78.840 kb on + strand, within CSW01_00430at 78.860 kb on + strand, within CSW01_00430at 78.860 kb on + strand, within CSW01_00430at 78.868 kb on - strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.878 kb on + strand, within CSW01_00430at 78.886 kb on - strand, within CSW01_00430at 78.936 kb on + strand, within CSW01_00430at 78.936 kb on + strand, within CSW01_00430at 78.952 kb on + strandat 78.952 kb on + strandat 78.960 kb on - strandat 78.960 kb on - strandat 78.960 kb on - strandat 78.986 kb on - strandat 79.000 kb on + strandat 79.001 kb on + strandat 79.059 kb on - strandat 79.059 kb on - strandat 79.077 kb on + strandat 79.104 kb on - strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.130 kb on + strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.138 kb on - strandat 79.163 kb on - strand, within CSW01_00435at 79.185 kb on - strand, within CSW01_00435at 79.239 kb on + strand, within CSW01_00435at 79.242 kb on - strand, within CSW01_00435at 79.266 kb on - strand, within CSW01_00435at 79.331 kb on - strand, within CSW01_00435at 79.360 kb on + strand, within CSW01_00435at 79.368 kb on - strand, within CSW01_00435at 79.374 kb on - strand, within CSW01_00435at 79.410 kb on + strand, within CSW01_00435at 79.427 kb on - strand, within CSW01_00435at 79.437 kb on - strand, within CSW01_00435at 79.462 kb on + strand, within CSW01_00435at 79.467 kb on + strand, within CSW01_00435at 79.474 kb on + strand, within CSW01_00435at 79.475 kb on - strand, within CSW01_00435at 79.475 kb on - strand, within CSW01_00435at 79.475 kb on - strand, within CSW01_00435at 79.482 kb on - strand, within CSW01_00435at 79.482 kb on - strand, within CSW01_00435at 79.484 kb on + strand, within CSW01_00435at 79.490 kb on + strand, within CSW01_00435at 79.490 kb on + strand, within CSW01_00435at 79.492 kb on - strand, within CSW01_00435at 79.498 kb on - strand, within CSW01_00435at 79.498 kb on - strand, within CSW01_00435at 79.515 kb on - strand, within CSW01_00435at 79.609 kb on - strand, within CSW01_00435at 79.632 kb on + strand, within CSW01_00435at 79.633 kb on - strand, within CSW01_00435at 79.639 kb on + strand, within CSW01_00435at 79.696 kb on + strand, within CSW01_00435at 79.712 kb on + strand, within CSW01_00435at 79.720 kb on - strand, within CSW01_00435at 79.786 kb on + strand, within CSW01_00435at 79.786 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.787 kb on + strand, within CSW01_00435at 79.792 kb on + strand, within CSW01_00435at 79.795 kb on - strand, within CSW01_00435at 79.795 kb on - strand, within CSW01_00435at 79.800 kb on - strand, within CSW01_00435at 79.800 kb on - strand, within CSW01_00435at 79.832 kb on - strand, within CSW01_00435at 79.868 kb on + strand, within CSW01_00435at 79.876 kb on - strandat 79.876 kb on - strandat 79.876 kb on - strandat 79.876 kb on - strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.912 kb on + strandat 79.914 kb on - strandat 79.917 kb on + strandat 79.925 kb on - strandat 79.934 kb on + strandat 79.974 kb on + strandat 79.974 kb on + strandat 79.996 kb on + strandat 79.996 kb on + strandat 79.996 kb on + strandat 79.996 kb on + strandat 80.003 kb on - strandat 80.004 kb on - strandat 80.004 kb on - strandat 80.004 kb on - strandat 80.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_0.5%bileacids_aerobic_120MIN_ZN11B
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76,897 + CSW01_00420 0.18 -0.1
76,923 - CSW01_00420 0.23 -0.2
76,931 - CSW01_00420 0.25 +0.6
76,976 - CSW01_00420 0.33 -0.1
77,006 + CSW01_00420 0.39 -0.4
77,049 + CSW01_00420 0.47 -0.3
77,129 + CSW01_00420 0.62 +0.1
77,130 - CSW01_00420 0.62 +0.3
77,137 - CSW01_00420 0.64 -1.0
77,146 + CSW01_00420 0.65 +0.1
77,171 + CSW01_00420 0.70 -0.5
77,179 - CSW01_00420 0.72 +0.8
77,179 - CSW01_00420 0.72 -0.7
77,179 - CSW01_00420 0.72 +0.5
77,181 + CSW01_00420 0.72 -0.8
77,181 + CSW01_00420 0.72 +0.1
77,189 - CSW01_00420 0.73 -0.4
77,219 + CSW01_00420 0.79 -0.0
77,219 + CSW01_00420 0.79 +0.8
77,219 + CSW01_00420 0.79 +0.9
77,219 + CSW01_00420 0.79 -1.5
77,219 + CSW01_00420 0.79 -0.3
77,219 + CSW01_00420 0.79 -0.8
77,219 + CSW01_00420 0.79 -0.7
77,219 + CSW01_00420 0.79 +0.5
77,219 + CSW01_00420 0.79 -0.2
77,227 - CSW01_00420 0.81 -0.2
77,227 - CSW01_00420 0.81 +0.5
77,227 - CSW01_00420 0.81 -0.1
77,387 - -2.2
77,395 - -0.2
77,429 - -0.4
77,474 - CSW01_00425 0.22 -0.3
77,515 - CSW01_00425 0.34 +0.2
77,546 + CSW01_00425 0.44 +1.5
77,565 - CSW01_00425 0.50 -0.7
77,565 - CSW01_00425 0.50 +0.2
77,606 + CSW01_00425 0.62 +0.5
77,614 - CSW01_00425 0.65 +0.5
77,657 + CSW01_00425 0.78 -1.1
77,657 - CSW01_00425 0.78 -0.2
77,695 + -0.7
77,697 - +1.8
77,703 - +0.6
77,703 - +0.6
77,781 - +0.4
77,816 + -1.1
77,823 + -0.2
77,824 - +0.6
77,824 - +0.1
77,866 + +0.4
77,879 - +0.8
77,914 + -0.7
77,914 + +0.4
77,914 + +1.2
77,927 - -0.1
77,932 - +0.6
77,932 - +0.1
77,954 + -0.8
78,067 + CSW01_00430 0.17 +0.3
78,145 + CSW01_00430 0.24 +0.8
78,146 + CSW01_00430 0.24 +0.5
78,146 + CSW01_00430 0.24 +0.7
78,146 + CSW01_00430 0.24 +0.1
78,146 + CSW01_00430 0.24 +0.1
78,146 + CSW01_00430 0.24 +0.7
78,154 - CSW01_00430 0.25 -0.4
78,154 - CSW01_00430 0.25 +0.1
78,154 - CSW01_00430 0.25 -0.3
78,154 - CSW01_00430 0.25 +0.1
78,182 - CSW01_00430 0.27 -0.0
78,182 - CSW01_00430 0.27 -0.0
78,208 + CSW01_00430 0.29 +0.1
78,221 + CSW01_00430 0.30 +0.3
78,228 - CSW01_00430 0.31 +0.5
78,231 + CSW01_00430 0.31 -0.1
78,232 - CSW01_00430 0.31 -0.0
78,259 - CSW01_00430 0.33 +3.4
78,269 + CSW01_00430 0.34 +0.2
78,273 + CSW01_00430 0.35 -1.3
78,277 - CSW01_00430 0.35 +0.8
78,279 - CSW01_00430 0.35 +0.3
78,281 - CSW01_00430 0.35 +0.7
78,290 + CSW01_00430 0.36 +0.3
78,290 + CSW01_00430 0.36 -0.5
78,290 + CSW01_00430 0.36 +0.1
78,298 - CSW01_00430 0.37 -0.2
78,298 - CSW01_00430 0.37 +0.1
78,298 - CSW01_00430 0.37 -0.5
78,339 + CSW01_00430 0.40 -0.4
78,418 + CSW01_00430 0.47 +0.7
78,439 + CSW01_00430 0.48 +1.1
78,439 + CSW01_00430 0.48 -0.5
78,439 + CSW01_00430 0.48 -0.0
78,447 - CSW01_00430 0.49 +0.7
78,470 + CSW01_00430 0.51 +0.1
78,489 + CSW01_00430 0.53 -0.7
78,539 + CSW01_00430 0.57 -0.0
78,550 + CSW01_00430 0.58 +1.3
78,664 + CSW01_00430 0.67 -0.1
78,800 + CSW01_00430 0.79 +0.0
78,800 + CSW01_00430 0.79 -0.3
78,800 + CSW01_00430 0.79 -0.2
78,820 + CSW01_00430 0.80 +0.5
78,820 + CSW01_00430 0.80 +0.5
78,820 + CSW01_00430 0.80 +0.0
78,825 + CSW01_00430 0.81 +0.6
78,828 - CSW01_00430 0.81 -0.1
78,828 - CSW01_00430 0.81 +0.3
78,830 + CSW01_00430 0.81 +0.1
78,830 + CSW01_00430 0.81 +0.6
78,840 + CSW01_00430 0.82 +0.1
78,860 + CSW01_00430 0.84 -0.8
78,860 + CSW01_00430 0.84 +0.2
78,868 - CSW01_00430 0.84 -0.2
78,878 + CSW01_00430 0.85 -0.1
78,878 + CSW01_00430 0.85 -0.9
78,878 + CSW01_00430 0.85 +0.9
78,878 + CSW01_00430 0.85 +0.4
78,886 - CSW01_00430 0.86 -0.3
78,936 + CSW01_00430 0.90 -0.3
78,936 + CSW01_00430 0.90 +0.1
78,952 + +2.2
78,952 + -0.2
78,960 - +0.1
78,960 - -0.3
78,960 - +0.7
78,986 - +1.9
79,000 + -0.2
79,001 + +0.2
79,059 - +0.3
79,059 - +0.4
79,077 + -0.4
79,104 - -0.8
79,130 + -0.3
79,130 + +0.9
79,130 + -0.1
79,130 + +0.0
79,130 + +0.2
79,130 + +0.5
79,130 + +0.4
79,130 + +1.6
79,130 + -0.5
79,130 + -0.0
79,130 + -0.2
79,138 - -0.0
79,138 - +0.5
79,138 - -1.8
79,138 - +0.3
79,138 - +0.6
79,138 - +0.7
79,163 - CSW01_00435 0.12 -0.3
79,185 - CSW01_00435 0.14 +0.9
79,239 + CSW01_00435 0.20 +0.2
79,242 - CSW01_00435 0.21 -0.4
79,266 - CSW01_00435 0.23 +0.5
79,331 - CSW01_00435 0.30 +0.5
79,360 + CSW01_00435 0.34 +1.3
79,368 - CSW01_00435 0.35 -0.4
79,374 - CSW01_00435 0.35 -0.2
79,410 + CSW01_00435 0.39 +1.3
79,427 - CSW01_00435 0.41 +0.2
79,437 - CSW01_00435 0.42 +0.1
79,462 + CSW01_00435 0.45 +0.5
79,467 + CSW01_00435 0.45 +0.5
79,474 + CSW01_00435 0.46 +0.3
79,475 - CSW01_00435 0.46 +0.7
79,475 - CSW01_00435 0.46 +0.1
79,475 - CSW01_00435 0.46 +1.0
79,482 - CSW01_00435 0.47 -0.3
79,482 - CSW01_00435 0.47 +0.4
79,484 + CSW01_00435 0.47 +0.7
79,490 + CSW01_00435 0.48 +0.2
79,490 + CSW01_00435 0.48 +0.2
79,492 - CSW01_00435 0.48 +0.4
79,498 - CSW01_00435 0.49 +0.2
79,498 - CSW01_00435 0.49 +0.3
79,515 - CSW01_00435 0.51 -0.3
79,609 - CSW01_00435 0.61 -0.0
79,632 + CSW01_00435 0.63 +0.3
79,633 - CSW01_00435 0.64 +0.5
79,639 + CSW01_00435 0.64 -0.2
79,696 + CSW01_00435 0.71 +0.2
79,712 + CSW01_00435 0.72 -0.6
79,720 - CSW01_00435 0.73 -0.3
79,786 + CSW01_00435 0.80 -0.1
79,786 + CSW01_00435 0.80 +0.4
79,787 + CSW01_00435 0.80 -0.0
79,787 + CSW01_00435 0.80 -0.0
79,787 + CSW01_00435 0.80 -0.2
79,787 + CSW01_00435 0.80 -1.2
79,787 + CSW01_00435 0.80 +0.2
79,787 + CSW01_00435 0.80 -2.2
79,787 + CSW01_00435 0.80 +0.4
79,787 + CSW01_00435 0.80 +0.5
79,787 + CSW01_00435 0.80 +0.5
79,787 + CSW01_00435 0.80 -0.5
79,787 + CSW01_00435 0.80 -0.3
79,787 + CSW01_00435 0.80 -0.5
79,787 + CSW01_00435 0.80 +0.0
79,792 + CSW01_00435 0.81 +0.2
79,795 - CSW01_00435 0.81 +0.3
79,795 - CSW01_00435 0.81 +0.5
79,800 - CSW01_00435 0.82 -0.1
79,800 - CSW01_00435 0.82 +0.5
79,832 - CSW01_00435 0.85 -0.7
79,868 + CSW01_00435 0.89 +0.5
79,876 - +0.7
79,876 - +0.6
79,876 - +0.2
79,876 - +0.6
79,912 + +0.4
79,912 + +0.2
79,912 + +0.2
79,912 + +0.5
79,912 + +0.6
79,912 + -0.3
79,914 - -0.0
79,917 + -0.2
79,925 - -0.4
79,934 + -0.2
79,974 + +0.2
79,974 + -0.1
79,996 + +0.0
79,996 + +0.7
79,996 + +0.1
79,996 + -0.1
80,003 - -3.4
80,004 - -0.2
80,004 - -1.3
80,004 - +0.6
80,037 - +0.0

Or see this region's nucleotide sequence