Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS26575

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS26565 and BPHYT_RS26570 are separated by 57 nucleotidesBPHYT_RS26570 and BPHYT_RS26575 are separated by 46 nucleotidesBPHYT_RS26575 and BPHYT_RS26580 are separated by 321 nucleotides BPHYT_RS26565: BPHYT_RS26565 - membrane protein, at 1,528,717 to 1,529,457 _RS26565 BPHYT_RS26570: BPHYT_RS26570 - 5'-nucleotidase, at 1,529,515 to 1,530,294 _RS26570 BPHYT_RS26575: BPHYT_RS26575 - hypothetical protein, at 1,530,341 to 1,531,324 _RS26575 BPHYT_RS26580: BPHYT_RS26580 - hypothetical protein, at 1,531,646 to 1,532,545 _RS26580 Position (kb) 1530 1531 1532Strain fitness (log2 ratio) -1 0 1at 1529.480 kb on + strandat 1529.481 kb on - strandat 1529.524 kb on + strandat 1530.142 kb on + strand, within BPHYT_RS26570at 1530.685 kb on + strand, within BPHYT_RS26575at 1531.149 kb on - strand, within BPHYT_RS26575at 1531.321 kb on - strandat 1531.460 kb on + strandat 1531.500 kb on + strandat 1531.501 kb on - strandat 1531.536 kb on - strandat 1531.536 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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1,529,480 + +0.2
1,529,481 - -0.2
1,529,524 + +1.2
1,530,142 + BPHYT_RS26570 0.80 -1.1
1,530,685 + BPHYT_RS26575 0.35 -0.7
1,531,149 - BPHYT_RS26575 0.82 -1.5
1,531,321 - +1.6
1,531,460 + +0.9
1,531,500 + +0.8
1,531,501 - +0.8
1,531,536 - -0.2
1,531,536 - -0.3

Or see this region's nucleotide sequence