Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS25080

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS25075 and BPHYT_RS25080 are separated by 88 nucleotidesBPHYT_RS25080 and BPHYT_RS25085 are separated by 319 nucleotides BPHYT_RS25075: BPHYT_RS25075 - AraC family transcriptional regulator, at 1,196,281 to 1,197,279 _RS25075 BPHYT_RS25080: BPHYT_RS25080 - glycine/betaine ABC transporter substrate-binding protein, at 1,197,368 to 1,198,303 _RS25080 BPHYT_RS25085: BPHYT_RS25085 - sugar-binding protein, at 1,198,623 to 1,201,085 _RS25085 Position (kb) 1197 1198 1199Strain fitness (log2 ratio) -2 -1 0 1 2at 1196.423 kb on - strand, within BPHYT_RS25075at 1197.110 kb on - strand, within BPHYT_RS25075at 1197.669 kb on + strand, within BPHYT_RS25080at 1197.998 kb on + strand, within BPHYT_RS25080at 1198.287 kb on - strandat 1198.314 kb on + strandat 1198.727 kb on + strandat 1198.810 kb on + strandat 1198.811 kb on - strandat 1198.818 kb on + strandat 1199.048 kb on + strand, within BPHYT_RS25085

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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1,196,423 - BPHYT_RS25075 0.14 +2.4
1,197,110 - BPHYT_RS25075 0.83 +0.8
1,197,669 + BPHYT_RS25080 0.32 -1.8
1,197,998 + BPHYT_RS25080 0.67 +1.4
1,198,287 - +0.2
1,198,314 + -1.2
1,198,727 + +1.3
1,198,810 + -0.4
1,198,811 - -0.1
1,198,818 + -0.2
1,199,048 + BPHYT_RS25085 0.17 -0.8

Or see this region's nucleotide sequence