Experiment: With vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS23025 and BPHYT_RS23030 overlap by 1 nucleotides BPHYT_RS23030 and BPHYT_RS23035 are separated by 367 nucleotides
BPHYT_RS23025: BPHYT_RS23025 - GMC family oxidoreductase, at 725,956 to 727,734
_RS23025
BPHYT_RS23030: BPHYT_RS23030 - gluconate 2-dehydrogenase, at 727,734 to 728,474
_RS23030
BPHYT_RS23035: BPHYT_RS23035 - hypothetical protein, at 728,842 to 729,639
_RS23035
Position (kb) 727
728
729 Strain fitness (log2 ratio) -2
-1
0
1 at 726.990 kb on - strand, within BPHYT_RS23025 at 726.990 kb on - strand, within BPHYT_RS23025 at 727.072 kb on - strand, within BPHYT_RS23025 at 727.143 kb on - strand, within BPHYT_RS23025 at 727.214 kb on - strand, within BPHYT_RS23025 at 727.556 kb on + strand, within BPHYT_RS23025 at 727.556 kb on + strand, within BPHYT_RS23025 at 727.557 kb on - strand at 727.557 kb on - strand at 727.557 kb on - strand at 727.557 kb on - strand at 728.143 kb on + strand, within BPHYT_RS23030 at 728.436 kb on + strand at 728.456 kb on + strand at 728.457 kb on - strand at 728.482 kb on + strand at 728.483 kb on - strand at 728.483 kb on - strand at 728.585 kb on - strand at 728.819 kb on + strand at 728.819 kb on + strand at 728.820 kb on - strand at 728.820 kb on - strand at 728.904 kb on + strand at 728.946 kb on - strand, within BPHYT_RS23035 at 729.277 kb on - strand, within BPHYT_RS23035
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t1 remove 726,990 - BPHYT_RS23025 0.58 -1.6 726,990 - BPHYT_RS23025 0.58 -1.0 727,072 - BPHYT_RS23025 0.63 -0.2 727,143 - BPHYT_RS23025 0.67 -1.8 727,214 - BPHYT_RS23025 0.71 +0.5 727,556 + BPHYT_RS23025 0.90 +0.1 727,556 + BPHYT_RS23025 0.90 -2.5 727,557 - +0.4 727,557 - -0.7 727,557 - -0.2 727,557 - -1.2 728,143 + BPHYT_RS23030 0.55 -1.1 728,436 + +0.8 728,456 + -0.1 728,457 - -0.1 728,482 + +0.8 728,483 - -0.4 728,483 - -0.6 728,585 - +0.8 728,819 + -0.0 728,819 + +0.9 728,820 - +0.3 728,820 - +0.4 728,904 + +0.6 728,946 - BPHYT_RS23035 0.13 +0.2 729,277 - BPHYT_RS23035 0.55 +0.5
Or see this region's nucleotide sequence