Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS20740

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS20730 and BPHYT_RS20735 are separated by 464 nucleotidesBPHYT_RS20735 and BPHYT_RS20740 are separated by 319 nucleotidesBPHYT_RS20740 and BPHYT_RS20745 are separated by 17 nucleotides BPHYT_RS20730: BPHYT_RS20730 - TetR family transcriptional regulator, at 212,053 to 212,787 _RS20730 BPHYT_RS20735: BPHYT_RS20735 - hypothetical protein, at 213,252 to 213,458 _RS20735 BPHYT_RS20740: BPHYT_RS20740 - D-ribose transporter ATP binding protein, at 213,778 to 215,289 _RS20740 BPHYT_RS20745: BPHYT_RS20745 - ribose ABC transporter permease, at 215,307 to 216,332 _RS20745 Position (kb) 213 214 215 216Strain fitness (log2 ratio) -2 -1 0 1at 212.987 kb on - strandat 212.990 kb on + strandat 213.076 kb on - strandat 213.097 kb on - strandat 213.239 kb on - strandat 215.539 kb on + strand, within BPHYT_RS20745at 215.950 kb on - strand, within BPHYT_RS20745at 216.064 kb on + strand, within BPHYT_RS20745

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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212,987 - +0.5
212,990 + -0.0
213,076 - -0.8
213,097 - +0.8
213,239 - -1.8
215,539 + BPHYT_RS20745 0.23 +0.4
215,950 - BPHYT_RS20745 0.63 +0.1
216,064 + BPHYT_RS20745 0.74 -0.2

Or see this region's nucleotide sequence