Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS19900

Experiment: With vitamins t1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBPHYT_RS19890 and BPHYT_RS19895 are separated by 47 nucleotidesBPHYT_RS19895 and BPHYT_RS19900 are separated by 303 nucleotidesBPHYT_RS19900 and BPHYT_RS19905 are separated by 279 nucleotides BPHYT_RS19890: BPHYT_RS19890 - hypothetical protein, at 6,280 to 6,783 _RS19890 BPHYT_RS19895: BPHYT_RS19895 - rod shape-determining protein RodA, at 6,831 to 7,265 _RS19895 BPHYT_RS19900: BPHYT_RS19900 - hypothetical protein, at 7,569 to 7,850 _RS19900 BPHYT_RS19905: BPHYT_RS19905 - membrane protein, at 8,130 to 9,530 _RS19905 Position (kb) 7 8Strain fitness (log2 ratio) -1 0 1at 6.939 kb on - strand, within BPHYT_RS19895at 7.653 kb on + strand, within BPHYT_RS19900at 8.493 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction With vitamins t1
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6,939 - BPHYT_RS19895 0.25 +0.1
7,653 + BPHYT_RS19900 0.30 -0.5
8,493 + +1.4

Or see this region's nucleotide sequence