Experiment: With vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS04175 and BPHYT_RS04180 are separated by 432 nucleotides BPHYT_RS04180 and BPHYT_RS04185 are separated by 73 nucleotides
BPHYT_RS04175: BPHYT_RS04175 - hypothetical protein, at 957,402 to 958,118
_RS04175
BPHYT_RS04180: BPHYT_RS04180 - sugar ABC transporter substrate-binding protein, at 958,551 to 959,798
_RS04180
BPHYT_RS04185: BPHYT_RS04185 - diguanylate cyclase, at 959,872 to 961,116
_RS04185
Position (kb) 958
959
960 Strain fitness (log2 ratio) -2
-1
0
1
2 at 957.601 kb on + strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.669 kb on - strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.697 kb on + strand, within BPHYT_RS04175 at 957.872 kb on - strand, within BPHYT_RS04175 at 957.917 kb on - strand, within BPHYT_RS04175 at 957.958 kb on - strand, within BPHYT_RS04175 at 958.096 kb on + strand at 958.096 kb on + strand at 958.202 kb on + strand at 958.367 kb on + strand at 958.368 kb on - strand at 958.389 kb on + strand at 958.447 kb on + strand at 958.492 kb on + strand at 958.552 kb on + strand at 958.638 kb on - strand at 958.730 kb on - strand, within BPHYT_RS04180 at 958.798 kb on + strand, within BPHYT_RS04180 at 958.799 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.916 kb on - strand, within BPHYT_RS04180 at 958.934 kb on + strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 958.956 kb on - strand, within BPHYT_RS04180 at 959.407 kb on + strand, within BPHYT_RS04180 at 959.408 kb on - strand, within BPHYT_RS04180 at 959.518 kb on - strand, within BPHYT_RS04180 at 959.518 kb on - strand, within BPHYT_RS04180 at 959.646 kb on - strand, within BPHYT_RS04180 at 959.709 kb on + strand at 959.873 kb on + strand at 959.874 kb on - strand at 959.899 kb on - strand at 960.018 kb on - strand, within BPHYT_RS04185 at 960.018 kb on - strand, within BPHYT_RS04185 at 960.018 kb on - strand, within BPHYT_RS04185 at 960.018 kb on - strand, within BPHYT_RS04185 at 960.054 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.056 kb on + strand, within BPHYT_RS04185 at 960.057 kb on - strand, within BPHYT_RS04185 at 960.057 kb on - strand, within BPHYT_RS04185 at 960.276 kb on + strand, within BPHYT_RS04185 at 960.277 kb on - strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.278 kb on + strand, within BPHYT_RS04185 at 960.279 kb on - strand, within BPHYT_RS04185 at 960.380 kb on - strand, within BPHYT_RS04185 at 960.438 kb on - strand, within BPHYT_RS04185 at 960.470 kb on + strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.703 kb on - strand, within BPHYT_RS04185 at 960.710 kb on + strand, within BPHYT_RS04185 at 960.710 kb on + strand, within BPHYT_RS04185 at 960.710 kb on + strand, within BPHYT_RS04185 at 960.711 kb on - strand, within BPHYT_RS04185 at 960.756 kb on - strand, within BPHYT_RS04185
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t1 remove 957,601 + BPHYT_RS04175 0.28 -0.3 957,669 - BPHYT_RS04175 0.37 +2.2 957,669 - BPHYT_RS04175 0.37 +0.3 957,697 + BPHYT_RS04175 0.41 -0.1 957,697 + BPHYT_RS04175 0.41 +1.6 957,872 - BPHYT_RS04175 0.66 +0.1 957,917 - BPHYT_RS04175 0.72 -0.8 957,958 - BPHYT_RS04175 0.78 +0.1 958,096 + -1.0 958,096 + -0.2 958,202 + -1.7 958,367 + -2.2 958,368 - +0.4 958,389 + +0.4 958,447 + +0.9 958,492 + +0.0 958,552 + -0.7 958,638 - -0.4 958,730 - BPHYT_RS04180 0.14 +1.6 958,798 + BPHYT_RS04180 0.20 +0.8 958,799 - BPHYT_RS04180 0.20 -1.5 958,916 - BPHYT_RS04180 0.29 -0.4 958,916 - BPHYT_RS04180 0.29 +0.5 958,934 + BPHYT_RS04180 0.31 +1.5 958,956 - BPHYT_RS04180 0.32 -0.5 958,956 - BPHYT_RS04180 0.32 +0.0 959,407 + BPHYT_RS04180 0.69 +0.4 959,408 - BPHYT_RS04180 0.69 +0.0 959,518 - BPHYT_RS04180 0.77 +0.6 959,518 - BPHYT_RS04180 0.77 +2.2 959,646 - BPHYT_RS04180 0.88 +0.6 959,709 + +0.2 959,873 + -0.3 959,874 - +0.9 959,899 - +1.2 960,018 - BPHYT_RS04185 0.12 +0.4 960,018 - BPHYT_RS04185 0.12 -0.4 960,018 - BPHYT_RS04185 0.12 -1.7 960,018 - BPHYT_RS04185 0.12 -1.7 960,054 + BPHYT_RS04185 0.15 -0.2 960,056 + BPHYT_RS04185 0.15 +0.2 960,056 + BPHYT_RS04185 0.15 +0.3 960,056 + BPHYT_RS04185 0.15 -0.5 960,056 + BPHYT_RS04185 0.15 -2.4 960,056 + BPHYT_RS04185 0.15 +1.6 960,056 + BPHYT_RS04185 0.15 +1.3 960,057 - BPHYT_RS04185 0.15 -1.1 960,057 - BPHYT_RS04185 0.15 +0.1 960,276 + BPHYT_RS04185 0.32 -0.7 960,277 - BPHYT_RS04185 0.33 +0.8 960,278 + BPHYT_RS04185 0.33 +1.5 960,278 + BPHYT_RS04185 0.33 -0.1 960,278 + BPHYT_RS04185 0.33 -1.1 960,278 + BPHYT_RS04185 0.33 -0.8 960,278 + BPHYT_RS04185 0.33 +0.6 960,279 - BPHYT_RS04185 0.33 +0.5 960,380 - BPHYT_RS04185 0.41 -0.1 960,438 - BPHYT_RS04185 0.45 +1.5 960,470 + BPHYT_RS04185 0.48 +0.3 960,703 - BPHYT_RS04185 0.67 +1.5 960,703 - BPHYT_RS04185 0.67 +0.3 960,703 - BPHYT_RS04185 0.67 +0.0 960,703 - BPHYT_RS04185 0.67 -0.1 960,710 + BPHYT_RS04185 0.67 +0.1 960,710 + BPHYT_RS04185 0.67 -1.1 960,710 + BPHYT_RS04185 0.67 +0.9 960,711 - BPHYT_RS04185 0.67 -0.5 960,756 - BPHYT_RS04185 0.71 +2.5
Or see this region's nucleotide sequence