Experiment: With vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS03960 and BPHYT_RS03965 are separated by 134 nucleotides BPHYT_RS03965 and BPHYT_RS03970 are separated by 308 nucleotides
BPHYT_RS03960: BPHYT_RS03960 - hypothetical protein, at 897,287 to 899,677
_RS03960
BPHYT_RS03965: BPHYT_RS03965 - GDP-mannose mannosyl hydrolase, at 899,812 to 900,264
_RS03965
BPHYT_RS03970: BPHYT_RS03970 - hypothetical protein, at 900,573 to 902,780
_RS03970
Position (kb) 899
900
901 Strain fitness (log2 ratio) -2
-1
0
1
2 at 898.980 kb on + strand, within BPHYT_RS03960 at 898.980 kb on + strand, within BPHYT_RS03960 at 898.981 kb on - strand, within BPHYT_RS03960 at 899.041 kb on + strand, within BPHYT_RS03960 at 899.052 kb on + strand, within BPHYT_RS03960 at 899.052 kb on + strand, within BPHYT_RS03960 at 899.057 kb on - strand, within BPHYT_RS03960 at 899.136 kb on - strand, within BPHYT_RS03960 at 899.716 kb on + strand at 899.823 kb on - strand at 899.886 kb on - strand, within BPHYT_RS03965 at 899.886 kb on - strand, within BPHYT_RS03965 at 899.886 kb on - strand, within BPHYT_RS03965 at 899.942 kb on + strand, within BPHYT_RS03965 at 900.312 kb on - strand at 900.314 kb on + strand at 900.314 kb on + strand at 900.315 kb on - strand at 900.481 kb on + strand at 900.481 kb on + strand at 900.491 kb on - strand at 900.509 kb on + strand at 900.509 kb on + strand at 900.509 kb on + strand at 900.510 kb on - strand at 900.512 kb on + strand at 900.512 kb on + strand at 900.513 kb on - strand at 900.513 kb on - strand at 900.643 kb on + strand at 900.770 kb on - strand at 900.884 kb on - strand, within BPHYT_RS03970 at 900.997 kb on + strand, within BPHYT_RS03970 at 901.144 kb on + strand, within BPHYT_RS03970 at 901.145 kb on - strand, within BPHYT_RS03970
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t1 remove 898,980 + BPHYT_RS03960 0.71 +0.8 898,980 + BPHYT_RS03960 0.71 +0.7 898,981 - BPHYT_RS03960 0.71 -0.7 899,041 + BPHYT_RS03960 0.73 -0.9 899,052 + BPHYT_RS03960 0.74 -0.2 899,052 + BPHYT_RS03960 0.74 -0.2 899,057 - BPHYT_RS03960 0.74 -0.1 899,136 - BPHYT_RS03960 0.77 +0.5 899,716 + -0.0 899,823 - +1.8 899,886 - BPHYT_RS03965 0.16 -0.8 899,886 - BPHYT_RS03965 0.16 -1.7 899,886 - BPHYT_RS03965 0.16 -2.6 899,942 + BPHYT_RS03965 0.29 -0.5 900,312 - +0.6 900,314 + -1.7 900,314 + -1.1 900,315 - -0.5 900,481 + +0.7 900,481 + +0.9 900,491 - +0.3 900,509 + +0.0 900,509 + -0.8 900,509 + +0.2 900,510 - -0.2 900,512 + +0.2 900,512 + -1.1 900,513 - +0.1 900,513 - +0.6 900,643 + -0.5 900,770 - +0.4 900,884 - BPHYT_RS03970 0.14 +0.7 900,997 + BPHYT_RS03970 0.19 +0.2 901,144 + BPHYT_RS03970 0.26 -0.8 901,145 - BPHYT_RS03970 0.26 +0.2
Or see this region's nucleotide sequence