Experiment: With vitamins t1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS01050 and BPHYT_RS01055 are separated by 86 nucleotides BPHYT_RS01055 and BPHYT_RS01060 are separated by 79 nucleotides
BPHYT_RS01050: BPHYT_RS01050 - short-chain dehydrogenase, at 239,774 to 240,649
_RS01050
BPHYT_RS01055: BPHYT_RS01055 - LysR family transcriptional regulator, at 240,736 to 241,665
_RS01055
BPHYT_RS01060: BPHYT_RS01060 - alcohol dehydrogenase, at 241,745 to 242,998
_RS01060
Position (kb) 240
241
242 Strain fitness (log2 ratio) -1
0
1 at 239.762 kb on + strand at 239.785 kb on + strand at 239.785 kb on + strand at 239.786 kb on - strand at 239.786 kb on - strand at 239.876 kb on - strand, within BPHYT_RS01050 at 239.961 kb on + strand, within BPHYT_RS01050 at 239.962 kb on - strand, within BPHYT_RS01050 at 240.001 kb on - strand, within BPHYT_RS01050 at 240.133 kb on - strand, within BPHYT_RS01050 at 240.447 kb on - strand, within BPHYT_RS01050 at 240.451 kb on + strand, within BPHYT_RS01050 at 240.451 kb on + strand, within BPHYT_RS01050 at 240.452 kb on - strand, within BPHYT_RS01050 at 240.581 kb on + strand at 240.581 kb on + strand at 240.581 kb on + strand at 240.706 kb on - strand at 240.706 kb on - strand at 240.750 kb on - strand at 240.768 kb on + strand at 241.096 kb on + strand, within BPHYT_RS01055 at 241.182 kb on + strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.183 kb on - strand, within BPHYT_RS01055 at 241.244 kb on - strand, within BPHYT_RS01055 at 241.557 kb on + strand, within BPHYT_RS01055 at 241.687 kb on + strand at 241.687 kb on + strand at 241.688 kb on - strand at 242.077 kb on - strand, within BPHYT_RS01060 at 242.077 kb on - strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.367 kb on + strand, within BPHYT_RS01060 at 242.557 kb on + strand, within BPHYT_RS01060 at 242.602 kb on - strand, within BPHYT_RS01060 at 242.605 kb on + strand, within BPHYT_RS01060
Per-strain Table
Position Strand Gene LocusTag Fraction With vitamins t1 remove 239,762 + +0.2 239,785 + -1.1 239,785 + +0.6 239,786 - -0.7 239,786 - -0.1 239,876 - BPHYT_RS01050 0.12 +0.4 239,961 + BPHYT_RS01050 0.21 +1.1 239,962 - BPHYT_RS01050 0.21 +0.2 240,001 - BPHYT_RS01050 0.26 +0.7 240,133 - BPHYT_RS01050 0.41 -0.1 240,447 - BPHYT_RS01050 0.77 -0.3 240,451 + BPHYT_RS01050 0.77 +0.5 240,451 + BPHYT_RS01050 0.77 +0.6 240,452 - BPHYT_RS01050 0.77 -0.1 240,581 + +0.1 240,581 + +0.6 240,581 + +0.1 240,706 - -0.3 240,706 - +1.4 240,750 - +0.8 240,768 + +0.3 241,096 + BPHYT_RS01055 0.39 -1.4 241,182 + BPHYT_RS01055 0.48 +0.6 241,183 - BPHYT_RS01055 0.48 +0.7 241,183 - BPHYT_RS01055 0.48 -0.2 241,183 - BPHYT_RS01055 0.48 +0.8 241,244 - BPHYT_RS01055 0.55 +1.0 241,557 + BPHYT_RS01055 0.88 +0.2 241,687 + +0.4 241,687 + +0.4 241,688 - +0.3 242,077 - BPHYT_RS01060 0.26 +0.9 242,077 - BPHYT_RS01060 0.26 +0.5 242,367 + BPHYT_RS01060 0.50 +1.3 242,367 + BPHYT_RS01060 0.50 -0.7 242,367 + BPHYT_RS01060 0.50 +0.0 242,557 + BPHYT_RS01060 0.65 +0.2 242,602 - BPHYT_RS01060 0.68 -0.1 242,605 + BPHYT_RS01060 0.69 +0.3
Or see this region's nucleotide sequence