Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_3290 and Shew_3291 are separated by 260 nucleotides Shew_3291 and Shew_3292 are separated by 66 nucleotides Shew_3292 and rpsI are separated by 106 nucleotides rpsI and rplM are separated by 15 nucleotides
Shew_3290: Shew_3290 - Sel1 domain-containing protein (RefSeq), at 3,934,127 to 3,934,813
_3290
Shew_3291: Shew_3291 - adenylosuccinate synthetase (RefSeq), at 3,935,074 to 3,936,369
_3291
Shew_3292: Shew_3292 - hypothetical protein (RefSeq), at 3,936,436 to 3,936,624
_3292
Shew_3293: rpsI - 30S ribosomal protein S9 (RefSeq), at 3,936,731 to 3,937,123
rpsI
Shew_3294: rplM - 50S ribosomal protein L13 (RefSeq), at 3,937,139 to 3,937,570
rplM
Position (kb) 3935
3936
3937 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3934.097 kb on + strand at 3934.289 kb on + strand, within Shew_3290 at 3934.601 kb on + strand, within Shew_3290 at 3934.665 kb on - strand, within Shew_3290 at 3934.900 kb on - strand at 3934.902 kb on + strand at 3935.030 kb on - strand at 3935.030 kb on - strand at 3936.474 kb on + strand, within Shew_3292 at 3936.572 kb on - strand, within Shew_3292
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 3,934,097 + -0.4 3,934,289 + Shew_3290 0.24 -1.6 3,934,601 + Shew_3290 0.69 -0.6 3,934,665 - Shew_3290 0.78 -0.8 3,934,900 - +0.5 3,934,902 + +0.3 3,935,030 - -0.2 3,935,030 - -1.3 3,936,474 + Shew_3292 0.20 -2.9 3,936,572 - Shew_3292 0.72 +0.4
Or see this region's nucleotide sequence