Strain Fitness in Shewanella loihica PV-4 around Shew_2312

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2310 and Shew_2311 are separated by 201 nucleotidesShew_2311 and Shew_2312 are separated by 118 nucleotidesShew_2312 and hscA are separated by 8 nucleotides Shew_2310: Shew_2310 - nucleoside-diphosphate kinase (RefSeq), at 2,708,004 to 2,708,435 _2310 Shew_2311: Shew_2311 - hypothetical protein (RefSeq), at 2,708,637 to 2,708,828 _2311 Shew_2312: Shew_2312 - ferredoxin, 2Fe-2S type, ISC system (RefSeq), at 2,708,947 to 2,709,282 _2312 Shew_2313: hscA - chaperone protein HscA (RefSeq), at 2,709,291 to 2,711,153 hscA Position (kb) 2708 2709 2710Strain fitness (log2 ratio) -1 0 1at 2707.972 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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2,707,972 - +0.1

Or see this region's nucleotide sequence