Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_2089 and Shew_2090 are separated by 3 nucleotides Shew_2090 and thiH are separated by 102 nucleotides thiH and Shew_2092 are separated by 4 nucleotides Shew_2092 and Shew_2093 are separated by 1 nucleotides Shew_2093 and Shew_2094 overlap by 8 nucleotides
Shew_2089: Shew_2089 - SrpA-related protein (RefSeq), at 2,416,453 to 2,417,850
_2089
Shew_2090: Shew_2090 - methyl-accepting chemotaxis protein (RefSeq), at 2,417,854 to 2,418,123
_2090
Shew_2091: thiH - thiamine biosynthesis protein ThiH (RefSeq), at 2,418,226 to 2,419,344
thiH
Shew_2092: Shew_2092 - thiazole biosynthesis family protein (RefSeq), at 2,419,349 to 2,420,122
_2092
Shew_2093: Shew_2093 - thiamine biosynthesis protein ThiS (RefSeq), at 2,420,124 to 2,420,333
_2093
Shew_2094: Shew_2094 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 2,420,326 to 2,421,174
_2094
Position (kb) 2418
2419
2420 Strain fitness (log2 ratio) -1
0
1 at 2417.296 kb on - strand, within Shew_2089 at 2418.052 kb on + strand, within Shew_2090 at 2419.000 kb on - strand, within thiH at 2419.000 kb on - strand, within thiH at 2419.930 kb on + strand, within Shew_2092
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 2,417,296 - Shew_2089 0.60 -0.3 2,418,052 + Shew_2090 0.73 +0.4 2,419,000 - thiH Shew_2091 0.69 +0.6 2,419,000 - thiH Shew_2091 0.69 +0.2 2,419,930 + Shew_2092 0.75 +0.4
Or see this region's nucleotide sequence