Strain Fitness in Shewanella loihica PV-4 around Shew_R0070

Experiment: Anaero. fumarate as E acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_2037 and Shew_R0069 are separated by 230 nucleotidesShew_R0069 and Shew_R0070 are separated by 20 nucleotidesShew_R0070 and Shew_2038 are separated by 61 nucleotidesShew_2038 and Shew_2039 are separated by 293 nucleotides Shew_2037: Shew_2037 - MATE efflux family protein (RefSeq), at 2,348,979 to 2,350,364 _2037 Shew_R0069: Shew_R0069 - tRNA-Val (RefSeq), at 2,350,595 to 2,350,671 _R0069 Shew_R0070: Shew_R0070 - tRNA-Val (RefSeq), at 2,350,692 to 2,350,768 _R0070 Shew_2038: Shew_2038 - hypothetical protein (RefSeq), at 2,350,830 to 2,351,273 _2038 Shew_2039: Shew_2039 - GCN5-related N-acetyltransferase (RefSeq), at 2,351,567 to 2,354,269 _2039 Position (kb) 2350 2351Strain fitness (log2 ratio) -2 -1 0 1at 2349.848 kb on + strand, within Shew_2037at 2349.940 kb on + strand, within Shew_2037at 2350.141 kb on + strand, within Shew_2037at 2350.267 kb on + strandat 2350.270 kb on - strandat 2351.032 kb on - strand, within Shew_2038

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
remove
2,349,848 + Shew_2037 0.63 -0.1
2,349,940 + Shew_2037 0.69 -0.5
2,350,141 + Shew_2037 0.84 +0.4
2,350,267 + -2.1
2,350,270 - -0.4
2,351,032 - Shew_2038 0.45 -0.6

Or see this region's nucleotide sequence