Strain Fitness in Shewanella loihica PV-4 around Shew_2032

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrplT and rpmI are separated by 18 nucleotidesrpmI and Shew_2031 are separated by 87 nucleotidesShew_2031 and Shew_2032 are separated by 24 nucleotidesShew_2032 and Shew_2033 are separated by 315 nucleotidesShew_2033 and Shew_2034 are separated by 150 nucleotides Shew_2029: rplT - 50S ribosomal protein L20 (RefSeq), at 2,343,311 to 2,343,670 rplT Shew_2030: rpmI - 50S ribosomal protein L35 (RefSeq), at 2,343,689 to 2,343,883 rpmI Shew_2031: Shew_2031 - translation initiation factor IF-3 (RefSeq), at 2,343,971 to 2,344,492 _2031 Shew_2032: Shew_2032 - threonyl-tRNA synthetase (RefSeq), at 2,344,517 to 2,346,445 _2032 Shew_2033: Shew_2033 - hypothetical protein (RefSeq), at 2,346,761 to 2,347,036 _2033 Shew_2034: Shew_2034 - short-chain dehydrogenase/reductase SDR (RefSeq), at 2,347,187 to 2,347,933 _2034 Position (kb) 2344 2345 2346 2347Strain fitness (log2 ratio) -1 0 1at 2346.595 kb on + strandat 2346.604 kb on - strandat 2346.967 kb on + strand, within Shew_2033at 2346.967 kb on + strand, within Shew_2033at 2347.093 kb on + strandat 2347.208 kb on - strandat 2347.409 kb on - strand, within Shew_2034

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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2,346,595 + +0.2
2,346,604 - +1.3
2,346,967 + Shew_2033 0.75 +0.0
2,346,967 + Shew_2033 0.75 +1.2
2,347,093 + -0.2
2,347,208 - -0.7
2,347,409 - Shew_2034 0.30 -1.1

Or see this region's nucleotide sequence