Strain Fitness in Shewanella loihica PV-4 around Shew_2020

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2016 and Shew_2017 overlap by 1 nucleotidesShew_2017 and Shew_2018 are separated by 8 nucleotidesShew_2018 and Shew_2019 are separated by 80 nucleotidesShew_2019 and Shew_2020 are separated by 24 nucleotidesShew_2020 and Shew_2021 are separated by 19 nucleotidesShew_2021 and Shew_2022 overlap by 8 nucleotides Shew_2016: Shew_2016 - DsrE family protein (RefSeq), at 2,331,612 to 2,331,971 _2016 Shew_2017: Shew_2017 - DsrH like protein (RefSeq), at 2,331,971 to 2,332,252 _2017 Shew_2018: Shew_2018 - DsrC family protein (RefSeq), at 2,332,261 to 2,332,584 _2018 Shew_2019: Shew_2019 - hypothetical protein (RefSeq), at 2,332,665 to 2,332,784 _2019 Shew_2020: Shew_2020 - seryl-tRNA synthetase (RefSeq), at 2,332,809 to 2,334,095 _2020 Shew_2021: Shew_2021 - CrcB protein (RefSeq), at 2,334,115 to 2,334,489 _2021 Shew_2022: Shew_2022 - recombination factor protein RarA (RefSeq), at 2,334,482 to 2,335,813 _2022 Position (kb) 2332 2333 2334 2335Strain fitness (log2 ratio) -1 0 1at 2334.502 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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2,334,502 + +0.2

Or see this region's nucleotide sequence