Strain Fitness in Shewanella loihica PV-4 around Shew_1971

Experiment: Anaero. fumarate as E acceptor

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Anaero. fumarate as E acceptor
2,277,690	-		Shew_1970	0.86	+0.6
2,277,740	-		Shew_1970	0.89	+1.3
2,277,936	+				-0.1
2,277,936	+				-0.1
2,277,936	+				+0.4
2,277,936	+				+0.0
2,277,986	-				-0.3
2,278,047	-				+0.3
2,278,052	-				+1.1
2,278,061	-				+0.4
2,278,111	-				+1.3
2,278,112	-				+0.7
2,278,127	-				+1.5
2,278,214	-				-2.1
2,278,258	+				+0.2
2,278,271	-				-0.4
2,278,303	-				+0.5
2,278,306	+				-0.1
2,278,319	+				+0.9
2,278,324	-				-2.6
2,278,332	-				-1.5
2,278,332	-				+0.8
2,278,348	+				+1.5
2,278,348	+				+0.2
2,278,395	+				+0.2
2,278,397	+				-3.8
2,278,397	+				-3.7
2,278,409	+				-1.1
2,278,465	+				+2.2
2,278,540	+				-0.0
2,278,543	+				-0.3
2,278,545	+				-0.2
2,278,551	-				-0.2
2,278,553	-				+0.4
2,278,564	+				+0.5
2,278,564	+				+0.2
2,278,564	+				-0.1
2,278,564	+				-1.4
2,278,564	+				-0.4
2,278,564	+				-0.1
2,278,575	+				-0.2
2,278,576	+				-0.7
2,278,576	+				-0.1
2,278,576	+				+0.1
2,278,576	+				+2.5
2,278,583	-				-2.1
2,278,584	-				-1.3
2,278,584	-				-0.1
2,278,584	-				-2.2
2,278,584	-				+0.7
2,278,584	-				+0.2
2,278,584	-				+1.6
2,278,584	-				+0.2
2,278,584	-				+0.2
2,278,584	-				-0.3
2,278,584	-				+0.6
2,278,584	-				-0.4
2,278,586	+				-0.2
2,278,586	+				+0.7
2,278,587	+				-0.2
2,278,587	+				+1.7
2,278,587	+				+0.3
2,278,587	+				-0.1
2,278,594	-				+0.4
2,278,594	-				-3.3
2,278,595	-				+0.3
2,278,606	-		Shew_1971	0.11	-0.1
2,278,617	-		Shew_1971	0.11	-4.1
2,278,681	+		Shew_1971	0.17	+0.7
2,278,688	+		Shew_1971	0.17	+0.1
2,278,689	-		Shew_1971	0.18	+0.2
2,278,693	+		Shew_1971	0.18	+0.9
2,278,693	+		Shew_1971	0.18	-0.1
2,278,693	+		Shew_1971	0.18	+0.9
2,278,698	-		Shew_1971	0.18	-0.2
2,278,700	+		Shew_1971	0.18	-1.8
2,278,701	-		Shew_1971	0.19	+1.3
2,278,701	-		Shew_1971	0.19	-0.6
2,278,702	+		Shew_1971	0.19	+0.4
2,278,702	+		Shew_1971	0.19	+0.0
2,278,702	+		Shew_1971	0.19	+0.2
2,278,702	+		Shew_1971	0.19	+0.3
2,278,702	+		Shew_1971	0.19	+0.4
2,278,702	-		Shew_1971	0.19	+0.1
2,278,702	+		Shew_1971	0.19	+0.1
2,278,702	+		Shew_1971	0.19	-0.8
2,278,702	+		Shew_1971	0.19	-4.9
2,278,702	-		Shew_1971	0.19	+1.6
2,278,702	+		Shew_1971	0.19	+0.5
2,278,702	+		Shew_1971	0.19	+0.2
2,278,702	+		Shew_1971	0.19	-0.1
2,278,702	+		Shew_1971	0.19	+0.5
2,278,702	+		Shew_1971	0.19	-1.1
2,278,702	+		Shew_1971	0.19	-3.0
2,278,702	+		Shew_1971	0.19	+0.6
2,278,702	+		Shew_1971	0.19	+0.4
2,278,702	+		Shew_1971	0.19	-0.8
2,278,702	+		Shew_1971	0.19	-3.1
2,278,702	+		Shew_1971	0.19	+0.2
2,278,702	+		Shew_1971	0.19	+0.8
2,278,710	-		Shew_1971	0.19	-0.3
2,278,710	-		Shew_1971	0.19	-0.4
2,278,710	-		Shew_1971	0.19	-5.4
2,278,710	-		Shew_1971	0.19	-1.8
2,278,710	-		Shew_1971	0.19	+0.9
2,278,710	-		Shew_1971	0.19	-2.5
2,278,710	-		Shew_1971	0.19	-0.6
2,278,710	-		Shew_1971	0.19	-4.5
2,278,710	-		Shew_1971	0.19	-0.2
2,278,710	-		Shew_1971	0.19	-4.4
2,278,710	-		Shew_1971	0.19	-0.3
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	-0.8
2,278,710	-		Shew_1971	0.19	-0.9
2,278,710	-		Shew_1971	0.19	-0.1
2,278,710	-		Shew_1971	0.19	+0.7
2,278,710	-		Shew_1971	0.19	-3.5
2,278,710	-		Shew_1971	0.19	+0.1
2,278,710	-		Shew_1971	0.19	+0.9
2,278,710	-		Shew_1971	0.19	+0.2
2,278,710	-		Shew_1971	0.19	-1.7
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	+0.5
2,278,710	-		Shew_1971	0.19	+0.7
2,278,710	-		Shew_1971	0.19	-1.0
2,278,710	-		Shew_1971	0.19	+0.4
2,278,710	-		Shew_1971	0.19	+1.6
2,278,751	+		Shew_1971	0.23	-0.0
2,278,759	-		Shew_1971	0.23	+0.1
2,278,768	-		Shew_1971	0.24	-1.1
2,278,770	+		Shew_1971	0.24	-1.8
2,278,770	+		Shew_1971	0.24	-0.2
2,278,778	-		Shew_1971	0.25	+0.6
2,278,778	-		Shew_1971	0.25	-0.7
2,278,778	-		Shew_1971	0.25	-0.0
2,278,780	+		Shew_1971	0.25	+0.5
2,278,780	+		Shew_1971	0.25	-1.6
2,278,815	+		Shew_1971	0.28	-0.4
2,278,815	+		Shew_1971	0.28	-0.5
2,278,910	+		Shew_1971	0.36	+0.6
2,278,913	-		Shew_1971	0.37	-3.4
2,278,919	+		Shew_1971	0.37	-3.8
2,279,224	-		Shew_1971	0.63	-3.4
2,279,261	-		Shew_1971	0.66	+1.3
2,279,294	-		Shew_1971	0.69	+0.4
2,279,294	-		Shew_1971	0.69	+0.8
2,279,311	+		Shew_1971	0.70	+2.0
2,279,319	-		Shew_1971	0.71	-1.9
2,279,319	-		Shew_1971	0.71	+0.6
2,279,361	+		Shew_1971	0.75	+0.0
2,279,391	+		Shew_1971	0.77	+0.5
2,279,391	+		Shew_1971	0.77	-0.0
2,279,399	-		Shew_1971	0.78	-0.4
2,279,399	-		Shew_1971	0.78	+0.1
2,279,399	-		Shew_1971	0.78	-0.4
2,279,399	-		Shew_1971	0.78	-0.8
2,279,399	-		Shew_1971	0.78	+0.0
2,279,399	-		Shew_1971	0.78	-0.6
2,279,399	-		Shew_1971	0.78	-0.3
2,279,399	-		Shew_1971	0.78	-1.5
2,279,409	+		Shew_1971	0.79	+0.5
2,279,416	+		Shew_1971	0.79	-0.0
2,279,424	-		Shew_1971	0.80	-0.0
2,279,434	-		Shew_1971	0.81	+1.2
2,279,434	-		Shew_1971	0.81	+0.4
2,279,440	-		Shew_1971	0.81	-0.8
2,279,441	+		Shew_1971	0.81	-3.2
2,279,444	-		Shew_1971	0.82	-3.6
2,279,449	-		Shew_1971	0.82	+0.6
2,279,449	-		Shew_1971	0.82	+0.1
2,279,460	+		Shew_1971	0.83	+0.3
2,279,468	-		Shew_1971	0.84	-0.1
2,279,469	+		Shew_1971	0.84	+0.6
2,279,474	+		Shew_1971	0.84	-0.2
2,279,474	+		Shew_1971	0.84	-0.1
2,279,474	+		Shew_1971	0.84	-3.5
2,279,476	+		Shew_1971	0.84	-3.6
2,279,477	-		Shew_1971	0.84	-0.2
2,279,477	-		Shew_1971	0.84	+1.5
2,279,482	-		Shew_1971	0.85	+0.3
2,279,486	+		Shew_1971	0.85	+0.5
2,279,497	-		Shew_1971	0.86	+1.5
2,279,498	-		Shew_1971	0.86	-1.6
2,279,502	-		Shew_1971	0.87	-2.5
2,279,504	+		Shew_1971	0.87	-0.3
2,279,521	-		Shew_1971	0.88	-1.3
2,279,540	-		Shew_1971	0.90	-1.4
2,279,566	+				-1.4
2,279,574	-				-0.4
2,279,577	+				+1.6
2,279,585	-				-0.5
2,279,587	-				+0.0
2,279,645	+				-0.1
2,279,645	+				-1.8
2,279,645	+				-1.4
2,279,645	+				-0.2
2,279,645	+				+0.3
2,279,645	+				+0.4
2,279,645	+				-0.5
2,279,650	+				-1.5
2,279,653	-				+0.5
2,279,653	-				+0.5
2,279,653	-				+0.9
2,279,653	-				-1.0
2,279,653	-				+0.5
2,279,653	-				+1.8
2,279,653	-				+1.2
2,279,653	-				+1.5
2,279,658	-				-4.6
2,279,658	-				+0.2
2,279,750	+				-0.3
2,279,758	-				-0.3
2,279,758	-				-2.2
2,279,815	+				+0.0
2,279,900	+				+0.4
2,279,900	+				-0.0
2,279,900	+				-0.0
2,279,901	+				-0.2
2,279,901	+				+0.1
2,279,904	-				+2.4
2,279,919	+				-0.1
2,279,924	+				+0.1
2,279,924	+				+0.3
2,279,924	+				-2.9
2,279,924	+				-0.6
2,279,924	+				-0.2
2,279,924	+				-0.2
2,279,924	+				-0.5
2,279,924	+				+0.4
2,279,924	+				+0.2
2,279,924	+				+0.1
2,279,924	+				+0.0
2,279,924	+				-1.0
2,279,924	+				-0.0
2,279,924	+				-0.3
2,279,924	+				-1.7
2,279,924	+				-0.0
2,279,924	+				-2.2
2,279,924	+				+1.5
2,279,929	+				+1.6
2,279,932	-				-0.0
2,279,932	-				+0.3
2,279,932	-				+0.9
2,279,932	-				+0.4
2,279,932	-				+0.2
2,279,932	-				-0.3
2,279,932	-				+0.2
2,279,932	-				-0.2
2,279,938	-				-1.2
2,279,948	+				+0.2
2,279,953	+				+0.2
2,279,955	+				-0.6
2,279,970	+				+0.6
2,279,978	-				-1.0
2,279,978	-				-0.9
2,279,986	+				-1.0
2,280,019	+		Shew_1972	0.12	-2.3
2,280,019	+		Shew_1972	0.12	+0.2
2,280,027	-		Shew_1972	0.13	+0.2
2,280,027	-		Shew_1972	0.13	+0.8
2,280,027	-		Shew_1972	0.13	-0.5
2,280,027	-		Shew_1972	0.13	-3.7
2,280,032	-		Shew_1972	0.13	-1.0
2,280,034	+		Shew_1972	0.13	-1.0
2,280,034	+		Shew_1972	0.13	-0.2
2,280,034	+		Shew_1972	0.13	+0.6
2,280,034	+		Shew_1972	0.13	+0.8
2,280,034	+		Shew_1972	0.13	+0.6
2,280,034	+		Shew_1972	0.13	+0.4
2,280,034	+		Shew_1972	0.13	+0.9
2,280,042	-		Shew_1972	0.14	+0.1
2,280,042	-		Shew_1972	0.14	+0.1
2,280,077	+		Shew_1972	0.16	+0.1
2,280,572	+		Shew_1972	0.53	+1.3
2,280,621	+		Shew_1972	0.57	+0.5