Strain Fitness in Shewanella loihica PV-4 around Shew_1958

Experiment: Anaero. fumarate as E acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntShew_1957 and Shew_1958 are separated by 35 nucleotidesShew_1958 and Shew_1959 are separated by 63 nucleotidesShew_1959 and Shew_1960 are separated by 38 nucleotides Shew_1957: Shew_1957 - hypothetical protein (RefSeq), at 2,262,067 to 2,263,227 _1957 Shew_1958: Shew_1958 - orotidine 5'-phosphate decarboxylase (RefSeq), at 2,263,263 to 2,263,958 _1958 Shew_1959: Shew_1959 - short chain dehydrogenase (RefSeq), at 2,264,022 to 2,264,837 _1959 Shew_1960: Shew_1960 - hypothetical protein (RefSeq), at 2,264,876 to 2,265,418 _1960 Position (kb) 2263 2264Strain fitness (log2 ratio) -1 0 1at 2264.071 kb on + strandat 2264.407 kb on - strand, within Shew_1959at 2264.915 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
remove
2,264,071 + -0.3
2,264,407 - Shew_1959 0.47 -1.5
2,264,915 - +0.8

Or see this region's nucleotide sequence