Strain Fitness in Shewanella loihica PV-4 around Shew_1848

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1846 and Shew_1847 overlap by 4 nucleotidesShew_1847 and Shew_1848 are separated by 243 nucleotidesShew_1848 and Shew_1849 are separated by 4 nucleotides Shew_1846: Shew_1846 - redoxin domain-containing protein (RefSeq), at 2,122,051 to 2,122,521 _1846 Shew_1847: Shew_1847 - amino acid-binding ACT domain-containing protein (RefSeq), at 2,122,518 to 2,123,072 _1847 Shew_1848: Shew_1848 - dihydrodipicolinate synthase (RefSeq), at 2,123,316 to 2,124,200 _1848 Shew_1849: Shew_1849 - NlpB/DapX family lipoprotein (RefSeq), at 2,124,205 to 2,125,326 _1849 Position (kb) 2123 2124 2125Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2123.154 kb on - strandat 2123.210 kb on - strandat 2124.467 kb on + strand, within Shew_1849

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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2,123,154 - +1.5
2,123,210 - -4.0
2,124,467 + Shew_1849 0.23 -1.8

Or see this region's nucleotide sequence