Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_1726 and Shew_1727 overlap by 4 nucleotides Shew_1727 and Shew_1728 are separated by 14 nucleotides Shew_1728 and Shew_1729 are separated by 2 nucleotides
Shew_1726: Shew_1726 - LuxR family transcriptional regulator (RefSeq), at 1,979,869 to 1,980,495
_1726
Shew_1727: Shew_1727 - hypothetical protein (RefSeq), at 1,980,492 to 1,980,959
_1727
Shew_1728: Shew_1728 - curli production assembly/transport component CsgF precursor (RefSeq), at 1,980,974 to 1,981,393
_1728
Shew_1729: Shew_1729 - curli production assembly/transport component CsgG (RefSeq), at 1,981,396 to 1,982,244
_1729
Position (kb) 1980
1981
1982 Strain fitness (log2 ratio) -1
0
1 at 1979.992 kb on - strand, within Shew_1726 at 1980.119 kb on + strand, within Shew_1726 at 1980.347 kb on + strand, within Shew_1726 at 1980.411 kb on - strand, within Shew_1726 at 1980.864 kb on + strand, within Shew_1727 at 1981.109 kb on - strand, within Shew_1728 at 1981.154 kb on + strand, within Shew_1728 at 1981.632 kb on + strand, within Shew_1729 at 1981.958 kb on + strand, within Shew_1729 at 1982.171 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 1,979,992 - Shew_1726 0.20 -0.7 1,980,119 + Shew_1726 0.40 +0.3 1,980,347 + Shew_1726 0.76 -0.9 1,980,411 - Shew_1726 0.86 +0.3 1,980,864 + Shew_1727 0.79 +0.8 1,981,109 - Shew_1728 0.32 -0.4 1,981,154 + Shew_1728 0.43 +0.6 1,981,632 + Shew_1729 0.28 +0.0 1,981,958 + Shew_1729 0.66 -0.1 1,982,171 + +0.4
Or see this region's nucleotide sequence