Strain Fitness in Shewanella loihica PV-4 around Shew_1297

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntxseA and Shew_1297 are separated by 119 nucleotidesShew_1297 and guaA are separated by 102 nucleotides Shew_1296: xseA - exodeoxyribonuclease VII large subunit (RefSeq), at 1,497,096 to 1,498,424 xseA Shew_1297: Shew_1297 - inositol-5-monophosphate dehydrogenase (RefSeq), at 1,498,544 to 1,500,010 _1297 Shew_1298: guaA - bifunctional GMP synthase/glutamine amidotransferase protein (RefSeq), at 1,500,113 to 1,501,690 guaA Position (kb) 1498 1499 1500 1501Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1497.718 kb on - strand, within xseAat 1497.755 kb on - strand, within xseAat 1497.762 kb on + strand, within xseAat 1497.964 kb on + strand, within xseAat 1498.208 kb on + strand, within xseAat 1498.347 kb on - strandat 1498.349 kb on + strandat 1498.487 kb on + strandat 1499.995 kb on - strandat 1500.417 kb on - strand, within guaAat 1500.814 kb on + strand, within guaAat 1500.821 kb on + strand, within guaA

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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1,497,718 - xseA Shew_1296 0.47 -0.1
1,497,755 - xseA Shew_1296 0.50 -2.0
1,497,762 + xseA Shew_1296 0.50 -0.5
1,497,964 + xseA Shew_1296 0.65 -0.6
1,498,208 + xseA Shew_1296 0.84 +0.4
1,498,347 - -0.3
1,498,349 + +0.1
1,498,487 + -2.6
1,499,995 - -4.6
1,500,417 - guaA Shew_1298 0.19 +1.2
1,500,814 + guaA Shew_1298 0.44 +1.0
1,500,821 + guaA Shew_1298 0.45 +1.4

Or see this region's nucleotide sequence