Strain Fitness in Shewanella loihica PV-4 around Shew_1229

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1227 and Shew_1228 are separated by 2 nucleotidesShew_1228 and Shew_1229 are separated by 98 nucleotidesShew_1229 and Shew_1230 are separated by 322 nucleotides Shew_1227: Shew_1227 - glutamate--cysteine ligase (RefSeq), at 1,426,467 to 1,428,038 _1227 Shew_1228: Shew_1228 - hypothetical protein (RefSeq), at 1,428,041 to 1,428,481 _1228 Shew_1229: Shew_1229 - hypothetical protein (RefSeq), at 1,428,580 to 1,429,197 _1229 Shew_1230: Shew_1230 - phosphoribosylaminoimidazole carboxylase, catalytic subunit (RefSeq), at 1,429,520 to 1,430,029 _1230 Position (kb) 1428 1429 1430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1427.665 kb on - strand, within Shew_1227at 1428.879 kb on + strand, within Shew_1229at 1429.063 kb on + strand, within Shew_1229at 1429.298 kb on - strandat 1429.538 kb on + strandat 1429.642 kb on + strand, within Shew_1230at 1429.642 kb on + strand, within Shew_1230at 1429.845 kb on - strand, within Shew_1230

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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1,427,665 - Shew_1227 0.76 -3.4
1,428,879 + Shew_1229 0.48 -2.8
1,429,063 + Shew_1229 0.78 +0.0
1,429,298 - +0.0
1,429,538 + -3.8
1,429,642 + Shew_1230 0.24 -3.8
1,429,642 + Shew_1230 0.24 -2.4
1,429,845 - Shew_1230 0.64 -2.2

Or see this region's nucleotide sequence