Strain Fitness in Shewanella loihica PV-4 around Shew_1012

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1011 and Shew_1012 are separated by 624 nucleotidesShew_1012 and Shew_1013 are separated by 27 nucleotides Shew_1011: Shew_1011 - citrate transporter (RefSeq), at 1,169,183 to 1,170,430 _1011 Shew_1012: Shew_1012 - glutamate-1-semialdehyde-2,1-aminomutase (RefSeq), at 1,171,055 to 1,172,341 _1012 Shew_1013: Shew_1013 - aspartate carbamoyltransferase (RefSeq), at 1,172,369 to 1,173,388 _1013 Position (kb) 1171 1172 1173Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1170.166 kb on - strand, within Shew_1011at 1170.272 kb on - strand, within Shew_1011at 1170.887 kb on - strandat 1170.887 kb on - strandat 1170.887 kb on - strandat 1173.126 kb on + strand, within Shew_1013at 1173.126 kb on + strand, within Shew_1013at 1173.126 kb on + strand, within Shew_1013at 1173.134 kb on - strand, within Shew_1013at 1173.193 kb on - strand, within Shew_1013

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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1,170,166 - Shew_1011 0.79 +1.6
1,170,272 - Shew_1011 0.87 -2.7
1,170,887 - +0.2
1,170,887 - -0.9
1,170,887 - -1.3
1,173,126 + Shew_1013 0.74 -5.4
1,173,126 + Shew_1013 0.74 -4.4
1,173,126 + Shew_1013 0.74 -3.5
1,173,134 - Shew_1013 0.75 -4.1
1,173,193 - Shew_1013 0.81 -4.6

Or see this region's nucleotide sequence