Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0856 and Shew_0857 are separated by 134 nucleotides Shew_0857 and Shew_0858 are separated by 129 nucleotides Shew_0858 and Shew_0859 are separated by 10 nucleotides Shew_0859 and Shew_0860 are separated by 78 nucleotides
Shew_0856: Shew_0856 - phosphoglycerate mutase (RefSeq), at 978,280 to 978,816
_0856
Shew_0857: Shew_0857 - hypothetical protein (RefSeq), at 978,951 to 979,550
_0857
Shew_0858: Shew_0858 - oxidoreductase FAD/NAD(P)-binding subunit (RefSeq), at 979,680 to 980,420
_0858
Shew_0859: Shew_0859 - glutathione S-transferase domain-containing protein (RefSeq), at 980,431 to 981,030
_0859
Shew_0860: Shew_0860 - hypothetical protein (RefSeq), at 981,109 to 981,579
_0860
Position (kb) 979
980
981 Strain fitness (log2 ratio) -2
-1
0
1 at 979.013 kb on + strand, within Shew_0857 at 979.282 kb on - strand, within Shew_0857 at 979.553 kb on - strand at 979.642 kb on - strand at 979.989 kb on - strand, within Shew_0858 at 979.991 kb on + strand, within Shew_0858 at 980.452 kb on + strand at 980.463 kb on + strand at 980.463 kb on + strand at 980.471 kb on - strand at 980.712 kb on - strand, within Shew_0859 at 980.712 kb on - strand, within Shew_0859 at 980.758 kb on + strand, within Shew_0859 at 980.815 kb on - strand, within Shew_0859 at 981.125 kb on + strand at 981.393 kb on - strand, within Shew_0860 at 981.393 kb on - strand, within Shew_0860
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 979,013 + Shew_0857 0.10 +0.5 979,282 - Shew_0857 0.55 -0.2 979,553 - -1.1 979,642 - +0.5 979,989 - Shew_0858 0.42 -1.2 979,991 + Shew_0858 0.42 -0.3 980,452 + +0.0 980,463 + -1.2 980,463 + +0.4 980,471 - -1.1 980,712 - Shew_0859 0.47 -0.0 980,712 - Shew_0859 0.47 +1.0 980,758 + Shew_0859 0.55 -0.6 980,815 - Shew_0859 0.64 +0.9 981,125 + +0.3 981,393 - Shew_0860 0.60 -2.0 981,393 - Shew_0860 0.60 -0.4
Or see this region's nucleotide sequence