Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfA and Shew_0845 are separated by 74 nucleotides Shew_0845 and Shew_0846 are separated by 252 nucleotides Shew_0846 and Shew_0847 are separated by 12 nucleotides
Shew_0844: nrfA - cytochrome c nitrite reductase (RefSeq), at 967,114 to 968,514
nrfA
Shew_0845: Shew_0845 - isochorismatase hydrolase (RefSeq), at 968,589 to 969,131
_0845
Shew_0846: Shew_0846 - nitrogen regulatory protein P-II (RefSeq), at 969,384 to 969,722
_0846
Shew_0847: Shew_0847 - Rh family protein/ammonium transporter (RefSeq), at 969,735 to 970,985
_0847
Position (kb) 968
969
970 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 967.595 kb on + strand, within nrfA at 967.686 kb on + strand, within nrfA at 967.721 kb on + strand, within nrfA at 967.791 kb on + strand, within nrfA at 967.911 kb on + strand, within nrfA at 968.054 kb on + strand, within nrfA at 968.141 kb on - strand, within nrfA at 968.361 kb on + strand, within nrfA at 968.361 kb on + strand, within nrfA at 968.524 kb on + strand at 968.634 kb on - strand at 968.762 kb on + strand, within Shew_0845 at 968.981 kb on + strand, within Shew_0845 at 969.098 kb on - strand at 969.379 kb on - strand at 969.447 kb on + strand, within Shew_0846 at 969.505 kb on + strand, within Shew_0846 at 969.564 kb on - strand, within Shew_0846 at 970.128 kb on - strand, within Shew_0847
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 967,595 + nrfA Shew_0844 0.34 -5.4 967,686 + nrfA Shew_0844 0.41 -1.3 967,721 + nrfA Shew_0844 0.43 -5.6 967,791 + nrfA Shew_0844 0.48 -1.4 967,911 + nrfA Shew_0844 0.57 -1.5 968,054 + nrfA Shew_0844 0.67 -1.5 968,141 - nrfA Shew_0844 0.73 -4.1 968,361 + nrfA Shew_0844 0.89 -2.7 968,361 + nrfA Shew_0844 0.89 -0.2 968,524 + -1.0 968,634 - +0.8 968,762 + Shew_0845 0.32 -0.2 968,981 + Shew_0845 0.72 +0.1 969,098 - +0.2 969,379 - +0.6 969,447 + Shew_0846 0.19 -1.1 969,505 + Shew_0846 0.36 +1.2 969,564 - Shew_0846 0.53 +0.2 970,128 - Shew_0847 0.31 -0.2
Or see this region's nucleotide sequence