Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0841 and Shew_0842 are separated by 91 nucleotides Shew_0842 and Shew_0843 are separated by 61 nucleotides Shew_0843 and nrfA are separated by 247 nucleotides
Shew_0841: Shew_0841 - hypothetical protein (RefSeq), at 964,006 to 964,380
_0841
Shew_0842: Shew_0842 - two component LuxR family transcriptional regulator (RefSeq), at 964,472 to 965,101
_0842
Shew_0843: Shew_0843 - nitrate/nitrite sensor protein NarQ (RefSeq), at 965,163 to 966,866
_0843
Shew_0844: nrfA - cytochrome c nitrite reductase (RefSeq), at 967,114 to 968,514
nrfA
Position (kb) 965
966
967 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 964.169 kb on - strand, within Shew_0841 at 964.210 kb on - strand, within Shew_0841 at 964.252 kb on - strand, within Shew_0841 at 964.278 kb on + strand, within Shew_0841 at 964.477 kb on + strand at 964.485 kb on - strand at 964.547 kb on + strand, within Shew_0842 at 964.725 kb on + strand, within Shew_0842 at 964.919 kb on - strand, within Shew_0842 at 965.227 kb on - strand at 965.587 kb on + strand, within Shew_0843 at 965.606 kb on + strand, within Shew_0843 at 965.620 kb on + strand, within Shew_0843 at 965.745 kb on + strand, within Shew_0843 at 965.753 kb on + strand, within Shew_0843 at 965.894 kb on + strand, within Shew_0843 at 966.200 kb on - strand, within Shew_0843 at 966.292 kb on + strand, within Shew_0843 at 966.571 kb on - strand, within Shew_0843 at 967.147 kb on - strand at 967.202 kb on + strand at 967.210 kb on - strand at 967.256 kb on - strand, within nrfA at 967.270 kb on + strand, within nrfA at 967.341 kb on - strand, within nrfA at 967.395 kb on + strand, within nrfA at 967.480 kb on - strand, within nrfA at 967.498 kb on + strand, within nrfA at 967.541 kb on - strand, within nrfA at 967.579 kb on - strand, within nrfA at 967.595 kb on + strand, within nrfA at 967.686 kb on + strand, within nrfA at 967.721 kb on + strand, within nrfA at 967.791 kb on + strand, within nrfA
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 964,169 - Shew_0841 0.43 -0.4 964,210 - Shew_0841 0.54 -0.1 964,252 - Shew_0841 0.66 +0.8 964,278 + Shew_0841 0.73 +0.1 964,477 + +0.3 964,485 - +0.1 964,547 + Shew_0842 0.12 -0.2 964,725 + Shew_0842 0.40 -0.6 964,919 - Shew_0842 0.71 -2.3 965,227 - +0.1 965,587 + Shew_0843 0.25 -0.8 965,606 + Shew_0843 0.26 -1.0 965,620 + Shew_0843 0.27 -0.2 965,745 + Shew_0843 0.34 -0.0 965,753 + Shew_0843 0.35 +0.3 965,894 + Shew_0843 0.43 +0.0 966,200 - Shew_0843 0.61 -0.8 966,292 + Shew_0843 0.66 -0.4 966,571 - Shew_0843 0.83 +0.7 967,147 - -4.2 967,202 + -4.1 967,210 - -1.9 967,256 - nrfA Shew_0844 0.10 -1.4 967,270 + nrfA Shew_0844 0.11 -1.8 967,341 - nrfA Shew_0844 0.16 -0.8 967,395 + nrfA Shew_0844 0.20 -1.2 967,480 - nrfA Shew_0844 0.26 -1.5 967,498 + nrfA Shew_0844 0.27 -2.2 967,541 - nrfA Shew_0844 0.30 -0.6 967,579 - nrfA Shew_0844 0.33 -0.3 967,595 + nrfA Shew_0844 0.34 -5.4 967,686 + nrfA Shew_0844 0.41 -1.3 967,721 + nrfA Shew_0844 0.43 -5.6 967,791 + nrfA Shew_0844 0.48 -1.4
Or see this region's nucleotide sequence