Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0825 and Shew_0826 are separated by 330 nucleotides Shew_0826 and Shew_0827 are separated by 110 nucleotides Shew_0827 and Shew_0828 are separated by 4 nucleotides
Shew_0825: Shew_0825 - ribose-5-phosphate isomerase A (RefSeq), at 948,036 to 948,695
_0825
Shew_0826: Shew_0826 - hypothetical protein (RefSeq), at 949,026 to 949,949
_0826
Shew_0827: Shew_0827 - peptidyl-prolyl cis-trans isomerase, cyclophilin type (RefSeq), at 950,060 to 950,707
_0827
Shew_0828: Shew_0828 - LysR family transcriptional regulator (RefSeq), at 950,712 to 951,605
_0828
Position (kb) 949
950 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 948.699 kb on - strand at 948.752 kb on + strand at 948.911 kb on + strand at 949.226 kb on + strand, within Shew_0826 at 949.761 kb on + strand, within Shew_0826 at 949.796 kb on + strand, within Shew_0826 at 949.845 kb on + strand, within Shew_0826 at 949.853 kb on - strand, within Shew_0826 at 950.145 kb on - strand, within Shew_0827 at 950.676 kb on + strand at 950.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 948,699 - -0.1 948,752 + +0.4 948,911 + +0.5 949,226 + Shew_0826 0.22 -0.2 949,761 + Shew_0826 0.80 -0.1 949,796 + Shew_0826 0.83 +0.0 949,845 + Shew_0826 0.89 -3.5 949,853 - Shew_0826 0.90 -1.9 950,145 - Shew_0827 0.13 -0.2 950,676 + +0.2 950,696 - +0.3
Or see this region's nucleotide sequence