Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0773 and Shew_0774 are separated by 206 nucleotides Shew_0774 and Shew_0775 are separated by 144 nucleotides Shew_0775 and Shew_0776 are separated by 99 nucleotides
Shew_0773: Shew_0773 - fructose-1,6-bisphosphatase (RefSeq), at 882,949 to 883,938
_0773
Shew_0774: Shew_0774 - peptidase S9B dipeptidylpeptidase IV subunit (RefSeq), at 884,145 to 886,397
_0774
Shew_0775: Shew_0775 - TetR family transcriptional regulator (RefSeq), at 886,542 to 887,099
_0775
Shew_0776: Shew_0776 - deaminase-reductase domain-containing protein (RefSeq), at 887,199 to 887,735
_0776
Position (kb) 884
885
886
887 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 884.121 kb on - strand at 884.164 kb on + strand at 884.227 kb on - strand at 884.319 kb on - strand at 884.337 kb on + strand at 884.622 kb on - strand, within Shew_0774 at 884.924 kb on + strand, within Shew_0774 at 884.932 kb on - strand, within Shew_0774 at 884.932 kb on - strand, within Shew_0774 at 884.964 kb on - strand, within Shew_0774 at 884.970 kb on - strand, within Shew_0774 at 885.025 kb on - strand, within Shew_0774 at 885.302 kb on + strand, within Shew_0774 at 885.562 kb on - strand, within Shew_0774 at 885.689 kb on + strand, within Shew_0774 at 885.907 kb on + strand, within Shew_0774 at 886.036 kb on - strand, within Shew_0774 at 886.108 kb on - strand, within Shew_0774 at 886.177 kb on - strand at 886.271 kb on + strand at 886.274 kb on - strand at 886.405 kb on + strand at 886.413 kb on - strand at 886.852 kb on + strand, within Shew_0775 at 886.866 kb on - strand, within Shew_0775 at 886.892 kb on + strand, within Shew_0775 at 886.893 kb on + strand, within Shew_0775 at 886.901 kb on - strand, within Shew_0775 at 886.988 kb on + strand, within Shew_0775 at 887.184 kb on + strand at 887.190 kb on - strand at 887.281 kb on - strand, within Shew_0776 at 887.393 kb on + strand, within Shew_0776
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 884,121 - -0.4 884,164 + -0.7 884,227 - +0.4 884,319 - +0.2 884,337 + -4.4 884,622 - Shew_0774 0.21 -0.3 884,924 + Shew_0774 0.35 -3.4 884,932 - Shew_0774 0.35 +0.1 884,932 - Shew_0774 0.35 -1.8 884,964 - Shew_0774 0.36 +0.1 884,970 - Shew_0774 0.37 +0.2 885,025 - Shew_0774 0.39 +0.8 885,302 + Shew_0774 0.51 +0.0 885,562 - Shew_0774 0.63 -0.0 885,689 + Shew_0774 0.69 +0.4 885,907 + Shew_0774 0.78 -2.3 886,036 - Shew_0774 0.84 -0.3 886,108 - Shew_0774 0.87 +0.1 886,177 - -1.0 886,271 + -0.3 886,274 - -0.0 886,405 + -0.1 886,413 - +0.7 886,852 + Shew_0775 0.56 -0.1 886,866 - Shew_0775 0.58 +0.3 886,892 + Shew_0775 0.63 -3.0 886,893 + Shew_0775 0.63 -0.4 886,901 - Shew_0775 0.64 +0.5 886,988 + Shew_0775 0.80 -0.6 887,184 + +0.3 887,190 - +0.8 887,281 - Shew_0776 0.15 +0.3 887,393 + Shew_0776 0.36 +0.6
Or see this region's nucleotide sequence