Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0741 and Shew_0742 are separated by 141 nucleotides Shew_0742 and Shew_0743 are separated by 164 nucleotides Shew_0743 and Shew_0744 are separated by 103 nucleotides Shew_0744 and Shew_0745 are separated by 183 nucleotides Shew_0745 and Shew_0746 are separated by 25 nucleotides
Shew_0741: Shew_0741 - GCN5-related N-acetyltransferase (RefSeq), at 843,511 to 843,954
_0741
Shew_0742: Shew_0742 - hypothetical protein (RefSeq), at 844,096 to 844,401
_0742
Shew_0743: Shew_0743 - sodium:dicarboxylate symporter (RefSeq), at 844,566 to 845,867
_0743
Shew_0744: Shew_0744 - protein of unknown function DUF306, Meta and HslJ (RefSeq), at 845,971 to 846,384
_0744
Shew_0745: Shew_0745 - hypothetical protein (RefSeq), at 846,568 to 846,807
_0745
Shew_0746: Shew_0746 - diguanylate cyclase (RefSeq), at 846,833 to 847,777
_0746
Position (kb) 844
845
846 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 843.716 kb on + strand, within Shew_0741 at 843.846 kb on + strand, within Shew_0741 at 843.874 kb on - strand, within Shew_0741 at 843.998 kb on - strand at 844.056 kb on - strand at 844.432 kb on + strand at 844.447 kb on + strand at 845.145 kb on - strand, within Shew_0743 at 845.304 kb on + strand, within Shew_0743 at 845.312 kb on - strand, within Shew_0743 at 845.324 kb on + strand, within Shew_0743 at 845.324 kb on + strand, within Shew_0743 at 845.332 kb on - strand, within Shew_0743 at 845.332 kb on - strand, within Shew_0743 at 845.332 kb on - strand, within Shew_0743 at 845.332 kb on - strand, within Shew_0743 at 845.372 kb on + strand, within Shew_0743 at 845.518 kb on - strand, within Shew_0743 at 845.786 kb on + strand at 846.029 kb on + strand, within Shew_0744 at 846.254 kb on + strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.262 kb on - strand, within Shew_0744 at 846.540 kb on + strand at 846.831 kb on + strand at 846.831 kb on + strand at 846.831 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 843,716 + Shew_0741 0.46 -1.9 843,846 + Shew_0741 0.75 -0.5 843,874 - Shew_0741 0.82 -2.8 843,998 - -0.7 844,056 - +0.7 844,432 + +0.1 844,447 + +0.3 845,145 - Shew_0743 0.44 +0.9 845,304 + Shew_0743 0.57 +0.6 845,312 - Shew_0743 0.57 -0.0 845,324 + Shew_0743 0.58 -0.6 845,324 + Shew_0743 0.58 +0.2 845,332 - Shew_0743 0.59 +1.5 845,332 - Shew_0743 0.59 -1.6 845,332 - Shew_0743 0.59 +1.4 845,332 - Shew_0743 0.59 +0.9 845,372 + Shew_0743 0.62 +1.5 845,518 - Shew_0743 0.73 +0.4 845,786 + +0.6 846,029 + Shew_0744 0.14 +0.9 846,254 + Shew_0744 0.68 +0.3 846,262 - Shew_0744 0.70 -3.8 846,262 - Shew_0744 0.70 -0.7 846,262 - Shew_0744 0.70 -3.6 846,262 - Shew_0744 0.70 -0.7 846,540 + +0.8 846,831 + +0.5 846,831 + +0.6 846,831 + +0.2
Or see this region's nucleotide sequence