Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0719 and Shew_0720 are separated by 57 nucleotides Shew_0720 and Shew_0721 are separated by 349 nucleotides Shew_0721 and Shew_0722 are separated by 11 nucleotides Shew_0722 and Shew_0723 are separated by 64 nucleotides
Shew_0719: Shew_0719 - periplasmic binding protein (RefSeq), at 819,519 to 820,343
_0719
Shew_0720: Shew_0720 - hypothetical protein (RefSeq), at 820,401 to 820,787
_0720
Shew_0721: Shew_0721 - RND family efflux transporter MFP subunit (RefSeq), at 821,137 to 822,399
_0721
Shew_0722: Shew_0722 - hypothetical protein (RefSeq), at 822,411 to 822,647
_0722
Shew_0723: Shew_0723 - ABC transporter-related protein (RefSeq), at 822,712 to 823,434
_0723
Position (kb) 821
822
823 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 820.323 kb on + strand at 820.323 kb on + strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.566 kb on + strand, within Shew_0720 at 820.661 kb on - strand, within Shew_0720 at 821.214 kb on - strand at 821.253 kb on - strand at 821.375 kb on + strand, within Shew_0721 at 821.405 kb on + strand, within Shew_0721 at 821.489 kb on + strand, within Shew_0721 at 821.529 kb on - strand, within Shew_0721 at 821.539 kb on - strand, within Shew_0721 at 821.568 kb on + strand, within Shew_0721 at 821.568 kb on + strand, within Shew_0721 at 821.703 kb on + strand, within Shew_0721 at 822.237 kb on + strand, within Shew_0721 at 822.245 kb on - strand, within Shew_0721 at 822.305 kb on + strand at 822.305 kb on + strand at 822.305 kb on + strand at 822.313 kb on - strand at 822.499 kb on - strand, within Shew_0722 at 822.686 kb on - strand at 822.925 kb on - strand, within Shew_0723 at 823.038 kb on - strand, within Shew_0723 at 823.071 kb on - strand, within Shew_0723 at 823.378 kb on - strand at 823.380 kb on + strand at 823.380 kb on + strand at 823.380 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 820,323 + -4.8 820,323 + -3.6 820,331 - -4.2 820,331 - -3.9 820,331 - -5.3 820,331 - -4.4 820,566 + Shew_0720 0.43 -0.9 820,661 - Shew_0720 0.67 +0.1 821,214 - +0.6 821,253 - +0.5 821,375 + Shew_0721 0.19 -0.6 821,405 + Shew_0721 0.21 +0.1 821,489 + Shew_0721 0.28 -0.3 821,529 - Shew_0721 0.31 -4.4 821,539 - Shew_0721 0.32 +0.5 821,568 + Shew_0721 0.34 +0.3 821,568 + Shew_0721 0.34 -1.3 821,703 + Shew_0721 0.45 +0.4 822,237 + Shew_0721 0.87 +0.0 822,245 - Shew_0721 0.88 -1.1 822,305 + -0.1 822,305 + +1.3 822,305 + +0.1 822,313 - +0.1 822,499 - Shew_0722 0.37 +0.8 822,686 - -0.3 822,925 - Shew_0723 0.29 -0.4 823,038 - Shew_0723 0.45 -1.0 823,071 - Shew_0723 0.50 -0.3 823,378 - -0.6 823,380 + +1.0 823,380 + -0.3 823,380 + +1.1
Or see this region's nucleotide sequence