Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0718 and Shew_0719 are separated by 380 nucleotides Shew_0719 and Shew_0720 are separated by 57 nucleotides Shew_0720 and Shew_0721 are separated by 349 nucleotides
Shew_0718: Shew_0718 - cob(I)yrinic acid a,c-diamide adenosyltransferase (RefSeq), at 818,509 to 819,138
_0718
Shew_0719: Shew_0719 - periplasmic binding protein (RefSeq), at 819,519 to 820,343
_0719
Shew_0720: Shew_0720 - hypothetical protein (RefSeq), at 820,401 to 820,787
_0720
Shew_0721: Shew_0721 - RND family efflux transporter MFP subunit (RefSeq), at 821,137 to 822,399
_0721
Position (kb) 819
820
821 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 818.664 kb on + strand, within Shew_0718 at 818.664 kb on + strand, within Shew_0718 at 819.563 kb on + strand at 819.575 kb on + strand at 819.635 kb on + strand, within Shew_0719 at 819.658 kb on + strand, within Shew_0719 at 819.763 kb on + strand, within Shew_0719 at 819.862 kb on + strand, within Shew_0719 at 819.922 kb on + strand, within Shew_0719 at 820.013 kb on + strand, within Shew_0719 at 820.323 kb on + strand at 820.323 kb on + strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.331 kb on - strand at 820.566 kb on + strand, within Shew_0720 at 820.661 kb on - strand, within Shew_0720 at 821.214 kb on - strand at 821.253 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 818,664 + Shew_0718 0.25 -0.7 818,664 + Shew_0718 0.25 -0.2 819,563 + -4.6 819,575 + -4.7 819,635 + Shew_0719 0.14 -3.9 819,658 + Shew_0719 0.17 -3.3 819,763 + Shew_0719 0.30 -3.2 819,862 + Shew_0719 0.42 -4.0 819,922 + Shew_0719 0.49 -4.7 820,013 + Shew_0719 0.60 -4.2 820,323 + -4.8 820,323 + -3.6 820,331 - -4.2 820,331 - -3.9 820,331 - -5.3 820,331 - -4.4 820,566 + Shew_0720 0.43 -0.9 820,661 - Shew_0720 0.67 +0.1 821,214 - +0.6 821,253 - +0.5
Or see this region's nucleotide sequence