Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0606 and Shew_0607 overlap by 4 nucleotides Shew_0607 and Shew_0608 are separated by 12 nucleotides Shew_0608 and Shew_0609 are separated by 290 nucleotides
Shew_0606: Shew_0606 - polysulphide reductase, NrfD (RefSeq), at 684,935 to 685,876
_0606
Shew_0607: Shew_0607 - 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq), at 685,873 to 686,445
_0607
Shew_0608: Shew_0608 - molybdopterin oxidoreductase (RefSeq), at 686,458 to 688,740
_0608
Shew_0609: Shew_0609 - two component LuxR family transcriptional regulator (RefSeq), at 689,031 to 689,630
_0609
Position (kb) 686
687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 685.657 kb on + strand, within Shew_0606 at 685.675 kb on - strand, within Shew_0606 at 685.697 kb on + strand, within Shew_0606 at 685.782 kb on - strand at 685.914 kb on + strand at 685.922 kb on - strand at 685.922 kb on - strand at 685.937 kb on + strand, within Shew_0607 at 686.846 kb on - strand, within Shew_0608 at 686.898 kb on + strand, within Shew_0608 at 687.101 kb on + strand, within Shew_0608 at 687.150 kb on - strand, within Shew_0608 at 687.337 kb on + strand, within Shew_0608 at 687.560 kb on + strand, within Shew_0608 at 687.651 kb on + strand, within Shew_0608 at 687.659 kb on - strand, within Shew_0608 at 687.724 kb on - strand, within Shew_0608 at 687.868 kb on - strand, within Shew_0608 at 687.868 kb on - strand, within Shew_0608 at 687.975 kb on - strand, within Shew_0608 at 688.335 kb on + strand, within Shew_0608 at 688.449 kb on + strand, within Shew_0608 at 688.465 kb on + strand, within Shew_0608 at 688.470 kb on + strand, within Shew_0608 at 688.624 kb on + strand at 688.779 kb on - strand at 688.869 kb on + strand at 689.090 kb on + strand at 689.198 kb on + strand, within Shew_0609 at 689.392 kb on - strand, within Shew_0609 at 689.549 kb on + strand, within Shew_0609 at 689.557 kb on - strand, within Shew_0609 at 689.679 kb on + strand at 689.687 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 685,657 + Shew_0606 0.77 -0.7 685,675 - Shew_0606 0.79 -1.0 685,697 + Shew_0606 0.81 +1.0 685,782 - +0.5 685,914 + -0.1 685,922 - +0.6 685,922 - +0.5 685,937 + Shew_0607 0.11 -1.7 686,846 - Shew_0608 0.17 +0.8 686,898 + Shew_0608 0.19 -2.1 687,101 + Shew_0608 0.28 +0.1 687,150 - Shew_0608 0.30 -2.6 687,337 + Shew_0608 0.39 +1.0 687,560 + Shew_0608 0.48 -0.2 687,651 + Shew_0608 0.52 -2.1 687,659 - Shew_0608 0.53 +0.2 687,724 - Shew_0608 0.55 +0.6 687,868 - Shew_0608 0.62 -0.5 687,868 - Shew_0608 0.62 -3.3 687,975 - Shew_0608 0.66 +0.5 688,335 + Shew_0608 0.82 +0.1 688,449 + Shew_0608 0.87 +0.2 688,465 + Shew_0608 0.88 -0.8 688,470 + Shew_0608 0.88 +0.6 688,624 + +0.1 688,779 - +1.2 688,869 + -1.3 689,090 + +0.8 689,198 + Shew_0609 0.28 +0.3 689,392 - Shew_0609 0.60 +0.4 689,549 + Shew_0609 0.86 -0.0 689,557 - Shew_0609 0.88 -0.4 689,679 + -1.6 689,687 - -0.1
Or see this region's nucleotide sequence