Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0497 and Shew_0498 are separated by 5 nucleotides Shew_0498 and Shew_0499 are separated by 145 nucleotides
Shew_0497: Shew_0497 - putative sulfate transporter YchM (RefSeq), at 555,306 to 557,003
_0497
Shew_0498: Shew_0498 - flavoprotein oxygenase (RefSeq), at 557,009 to 557,638
_0498
Shew_0499: Shew_0499 - Xaa-Pro aminopeptidase family enzyme (RefSeq), at 557,784 to 559,136
_0499
Position (kb) 557
558 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 556.026 kb on - strand, within Shew_0497 at 556.082 kb on + strand, within Shew_0497 at 556.218 kb on - strand, within Shew_0497 at 556.239 kb on - strand, within Shew_0497 at 556.241 kb on + strand, within Shew_0497 at 556.262 kb on + strand, within Shew_0497 at 556.332 kb on + strand, within Shew_0497 at 556.609 kb on + strand, within Shew_0497 at 556.609 kb on + strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 556.617 kb on - strand, within Shew_0497 at 557.090 kb on - strand, within Shew_0498 at 557.102 kb on - strand, within Shew_0498 at 557.170 kb on + strand, within Shew_0498 at 557.178 kb on - strand, within Shew_0498 at 557.453 kb on + strand, within Shew_0498 at 557.885 kb on - strand at 558.001 kb on + strand, within Shew_0499 at 558.375 kb on - strand, within Shew_0499 at 558.403 kb on + strand, within Shew_0499 at 558.403 kb on + strand, within Shew_0499 at 558.403 kb on + strand, within Shew_0499 at 558.411 kb on - strand, within Shew_0499 at 558.608 kb on + strand, within Shew_0499
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 556,026 - Shew_0497 0.42 -0.5 556,082 + Shew_0497 0.46 +0.1 556,218 - Shew_0497 0.54 -1.1 556,239 - Shew_0497 0.55 +0.2 556,241 + Shew_0497 0.55 +1.2 556,262 + Shew_0497 0.56 -0.2 556,332 + Shew_0497 0.60 +0.6 556,609 + Shew_0497 0.77 +0.5 556,609 + Shew_0497 0.77 -0.4 556,617 - Shew_0497 0.77 +0.6 556,617 - Shew_0497 0.77 -1.0 556,617 - Shew_0497 0.77 -0.6 556,617 - Shew_0497 0.77 -0.1 556,617 - Shew_0497 0.77 +0.7 557,090 - Shew_0498 0.13 -0.7 557,102 - Shew_0498 0.15 +0.8 557,170 + Shew_0498 0.26 +0.4 557,178 - Shew_0498 0.27 -0.2 557,453 + Shew_0498 0.70 +1.5 557,885 - -3.5 558,001 + Shew_0499 0.16 +0.5 558,375 - Shew_0499 0.44 +0.5 558,403 + Shew_0499 0.46 +0.3 558,403 + Shew_0499 0.46 -2.1 558,403 + Shew_0499 0.46 +0.8 558,411 - Shew_0499 0.46 +0.3 558,608 + Shew_0499 0.61 +0.2
Or see this region's nucleotide sequence