Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0442 and Shew_0443 are separated by 173 nucleotides Shew_0443 and Shew_0444 are separated by 144 nucleotides
Shew_0442: Shew_0442 - aldo/keto reductase (RefSeq), at 492,128 to 493,018
_0442
Shew_0443: Shew_0443 - formate--tetrahydrofolate ligase (RefSeq), at 493,192 to 494,886
_0443
Shew_0444: Shew_0444 - MscS mechanosensitive ion channel (RefSeq), at 495,031 to 496,653
_0444
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 492.252 kb on - strand, within Shew_0442 at 492.401 kb on + strand, within Shew_0442 at 492.409 kb on - strand, within Shew_0442 at 492.460 kb on + strand, within Shew_0442 at 492.468 kb on - strand, within Shew_0442 at 492.655 kb on + strand, within Shew_0442 at 492.751 kb on + strand, within Shew_0442 at 492.870 kb on + strand, within Shew_0442 at 493.004 kb on + strand at 493.005 kb on - strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.014 kb on + strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.022 kb on - strand at 493.122 kb on - strand at 493.187 kb on + strand at 493.234 kb on - strand at 493.302 kb on + strand at 493.406 kb on - strand, within Shew_0443 at 493.413 kb on - strand, within Shew_0443 at 493.415 kb on + strand, within Shew_0443 at 493.415 kb on + strand, within Shew_0443 at 493.423 kb on - strand, within Shew_0443 at 493.590 kb on + strand, within Shew_0443 at 493.774 kb on - strand, within Shew_0443 at 493.975 kb on + strand, within Shew_0443 at 494.107 kb on - strand, within Shew_0443 at 494.729 kb on + strand at 494.800 kb on - strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.880 kb on + strand at 494.888 kb on - strand at 495.159 kb on + strand at 495.328 kb on + strand, within Shew_0444 at 495.448 kb on - strand, within Shew_0444 at 495.549 kb on + strand, within Shew_0444 at 495.585 kb on - strand, within Shew_0444
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 492,252 - Shew_0442 0.14 +0.7 492,401 + Shew_0442 0.31 -0.3 492,409 - Shew_0442 0.32 +0.0 492,460 + Shew_0442 0.37 +0.2 492,468 - Shew_0442 0.38 +0.3 492,655 + Shew_0442 0.59 +0.2 492,751 + Shew_0442 0.70 -0.0 492,870 + Shew_0442 0.83 -0.0 493,004 + +0.4 493,005 - -0.0 493,014 + -0.1 493,014 + -0.1 493,014 + +0.2 493,014 + +0.1 493,014 + +0.2 493,022 - -0.9 493,022 - -0.6 493,022 - +0.2 493,022 - -0.8 493,022 - +0.4 493,022 - -0.0 493,122 - -0.2 493,187 + +0.1 493,234 - +0.6 493,302 + -0.1 493,406 - Shew_0443 0.13 -0.8 493,413 - Shew_0443 0.13 -0.1 493,415 + Shew_0443 0.13 -0.4 493,415 + Shew_0443 0.13 -0.9 493,423 - Shew_0443 0.14 -0.9 493,590 + Shew_0443 0.23 -0.8 493,774 - Shew_0443 0.34 -0.1 493,975 + Shew_0443 0.46 -0.6 494,107 - Shew_0443 0.54 -0.6 494,729 + +0.1 494,800 - +0.4 494,880 + -0.7 494,880 + -0.7 494,880 + -3.3 494,880 + +0.6 494,880 + +0.1 494,888 - -0.2 495,159 + -0.3 495,328 + Shew_0444 0.18 +0.3 495,448 - Shew_0444 0.26 -0.1 495,549 + Shew_0444 0.32 +0.2 495,585 - Shew_0444 0.34 +0.7
Or see this region's nucleotide sequence