Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0355 and Shew_0356 overlap by 4 nucleotides Shew_0356 and Shew_0357 overlap by 4 nucleotides Shew_0357 and Shew_0358 are separated by 180 nucleotides
Shew_0355: Shew_0355 - periplasmic copper-binding (RefSeq), at 403,215 to 404,573
_0355
Shew_0356: Shew_0356 - ABC transporter-related protein (RefSeq), at 404,570 to 405,499
_0356
Shew_0357: Shew_0357 - copper ABC transporter, permease protein (RefSeq), at 405,496 to 406,347
_0357
Shew_0358: Shew_0358 - transcriptional regulator, CadC (RefSeq), at 406,528 to 407,808
_0358
Position (kb) 405
406
407 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 404.597 kb on - strand at 404.721 kb on + strand, within Shew_0356 at 404.744 kb on - strand, within Shew_0356 at 404.853 kb on + strand, within Shew_0356 at 404.853 kb on + strand, within Shew_0356 at 404.861 kb on + strand, within Shew_0356 at 404.861 kb on - strand, within Shew_0356 at 404.861 kb on + strand, within Shew_0356 at 404.965 kb on - strand, within Shew_0356 at 405.017 kb on - strand, within Shew_0356 at 405.019 kb on + strand, within Shew_0356 at 405.022 kb on - strand, within Shew_0356 at 405.141 kb on + strand, within Shew_0356 at 405.149 kb on - strand, within Shew_0356 at 405.175 kb on - strand, within Shew_0356 at 405.175 kb on - strand, within Shew_0356 at 405.190 kb on + strand, within Shew_0356 at 405.213 kb on + strand, within Shew_0356 at 405.418 kb on + strand at 405.681 kb on - strand, within Shew_0357 at 405.683 kb on + strand, within Shew_0357 at 406.026 kb on - strand, within Shew_0357 at 406.078 kb on - strand, within Shew_0357 at 406.104 kb on - strand, within Shew_0357 at 406.305 kb on + strand at 406.393 kb on - strand at 407.263 kb on - strand, within Shew_0358
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 404,597 - -3.2 404,721 + Shew_0356 0.16 +0.4 404,744 - Shew_0356 0.19 +1.0 404,853 + Shew_0356 0.30 +0.2 404,853 + Shew_0356 0.30 -0.9 404,861 + Shew_0356 0.31 -0.2 404,861 - Shew_0356 0.31 -0.0 404,861 + Shew_0356 0.31 -4.1 404,965 - Shew_0356 0.42 -5.8 405,017 - Shew_0356 0.48 +1.0 405,019 + Shew_0356 0.48 -1.1 405,022 - Shew_0356 0.49 +0.7 405,141 + Shew_0356 0.61 -0.9 405,149 - Shew_0356 0.62 +0.0 405,175 - Shew_0356 0.65 -1.8 405,175 - Shew_0356 0.65 -0.4 405,190 + Shew_0356 0.67 +0.1 405,213 + Shew_0356 0.69 -0.0 405,418 + +0.8 405,681 - Shew_0357 0.22 +0.4 405,683 + Shew_0357 0.22 +0.3 406,026 - Shew_0357 0.62 +0.0 406,078 - Shew_0357 0.68 +0.2 406,104 - Shew_0357 0.71 -0.7 406,305 + -1.6 406,393 - +0.7 407,263 - Shew_0358 0.57 +0.2
Or see this region's nucleotide sequence