Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0233 and Shew_0234 are separated by 74 nucleotides Shew_0234 and Shew_0235 are separated by 13 nucleotides Shew_0235 and Shew_0236 are separated by 117 nucleotides
Shew_0233: Shew_0233 - hypothetical protein (RefSeq), at 247,659 to 250,001
_0233
Shew_0234: Shew_0234 - hypothetical protein (RefSeq), at 250,076 to 250,435
_0234
Shew_0235: Shew_0235 - isochorismatase hydrolase (RefSeq), at 250,449 to 251,399
_0235
Shew_0236: Shew_0236 - LysR family transcriptional regulator (RefSeq), at 251,517 to 252,434
_0236
Position (kb) 250
251
252 Strain fitness (log2 ratio) -1
0
1 at 249.635 kb on - strand, within Shew_0233 at 249.635 kb on - strand, within Shew_0233 at 249.818 kb on + strand at 249.982 kb on - strand at 250.144 kb on + strand, within Shew_0234 at 250.151 kb on + strand, within Shew_0234 at 250.179 kb on - strand, within Shew_0234 at 250.224 kb on + strand, within Shew_0234 at 250.481 kb on + strand at 250.659 kb on + strand, within Shew_0235 at 250.659 kb on + strand, within Shew_0235 at 250.662 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.667 kb on - strand, within Shew_0235 at 250.936 kb on + strand, within Shew_0235 at 251.742 kb on + strand, within Shew_0236 at 251.760 kb on - strand, within Shew_0236 at 252.100 kb on + strand, within Shew_0236 at 252.182 kb on + strand, within Shew_0236 at 252.243 kb on - strand, within Shew_0236
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 249,635 - Shew_0233 0.84 +0.0 249,635 - Shew_0233 0.84 +0.3 249,818 + +0.3 249,982 - -0.0 250,144 + Shew_0234 0.19 +0.1 250,151 + Shew_0234 0.21 -0.4 250,179 - Shew_0234 0.29 -0.2 250,224 + Shew_0234 0.41 +0.5 250,481 + +0.6 250,659 + Shew_0235 0.22 +0.8 250,659 + Shew_0235 0.22 +0.0 250,662 - Shew_0235 0.22 -0.0 250,667 - Shew_0235 0.23 +0.6 250,667 - Shew_0235 0.23 -0.2 250,936 + Shew_0235 0.51 +0.2 251,742 + Shew_0236 0.25 +0.5 251,760 - Shew_0236 0.26 -0.0 252,100 + Shew_0236 0.64 -0.2 252,182 + Shew_0236 0.72 -0.5 252,243 - Shew_0236 0.79 -0.6
Or see this region's nucleotide sequence