Strain Fitness in Shewanella loihica PV-4 around Shew_0206

Experiment: Anaero. fumarate as E acceptor

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_0205 and Shew_0206 are separated by 93 nucleotidesShew_0206 and Shew_0207 are separated by 171 nucleotides Shew_0205: Shew_0205 - argininosuccinate synthase (RefSeq), at 218,094 to 219,317 _0205 Shew_0206: Shew_0206 - argininosuccinate lyase (RefSeq), at 219,411 to 220,772 _0206 Shew_0207: Shew_0207 - 1A family penicillin-binding protein (RefSeq), at 220,944 to 223,529 _0207 Position (kb) 219 220 221Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 218.822 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.822 kb on + strand, within Shew_0205at 218.830 kb on - strand, within Shew_0205at 218.944 kb on + strand, within Shew_0205at 219.103 kb on + strand, within Shew_0205at 219.152 kb on + strand, within Shew_0205at 219.152 kb on + strand, within Shew_0205at 219.402 kb on - strandat 219.812 kb on + strand, within Shew_0206at 219.957 kb on + strand, within Shew_0206at 220.015 kb on + strand, within Shew_0206at 220.357 kb on - strand, within Shew_0206at 220.423 kb on + strand, within Shew_0206

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Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
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218,822 + Shew_0205 0.59 -4.0
218,822 + Shew_0205 0.59 -4.3
218,822 + Shew_0205 0.59 -4.8
218,822 + Shew_0205 0.59 -4.4
218,830 - Shew_0205 0.60 -5.1
218,944 + Shew_0205 0.69 -4.3
219,103 + Shew_0205 0.82 -3.7
219,152 + Shew_0205 0.86 -5.2
219,152 + Shew_0205 0.86 -5.0
219,402 - -4.2
219,812 + Shew_0206 0.29 -2.8
219,957 + Shew_0206 0.40 -4.8
220,015 + Shew_0206 0.44 -4.3
220,357 - Shew_0206 0.69 -5.0
220,423 + Shew_0206 0.74 -4.2

Or see this region's nucleotide sequence