Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shew_0066 and Shew_0067 are separated by 1 nucleotides Shew_0067 and Shew_0068 are separated by 214 nucleotides Shew_0068 and Shew_0069 are separated by 44 nucleotides
Shew_0066: Shew_0066 - hypothetical protein (RefSeq), at 79,885 to 80,250
_0066
Shew_0067: Shew_0067 - hypothetical protein (RefSeq), at 80,252 to 80,761
_0067
Shew_0068: Shew_0068 - fumarate lyase (RefSeq), at 80,976 to 82,355
_0068
Shew_0069: Shew_0069 - hypothetical protein (RefSeq), at 82,400 to 83,503
_0069
Position (kb) 80
81
82
83 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 80.040 kb on + strand, within Shew_0066 at 80.040 kb on + strand, within Shew_0066 at 80.048 kb on - strand, within Shew_0066 at 80.110 kb on + strand, within Shew_0066 at 80.118 kb on - strand, within Shew_0066 at 80.118 kb on - strand, within Shew_0066 at 80.209 kb on - strand, within Shew_0066 at 80.806 kb on + strand at 80.914 kb on - strand at 81.325 kb on + strand, within Shew_0068 at 81.361 kb on + strand, within Shew_0068 at 81.361 kb on + strand, within Shew_0068 at 81.399 kb on + strand, within Shew_0068 at 81.399 kb on + strand, within Shew_0068 at 81.407 kb on - strand, within Shew_0068 at 81.690 kb on - strand, within Shew_0068 at 81.797 kb on + strand, within Shew_0068 at 81.871 kb on + strand, within Shew_0068 at 81.888 kb on - strand, within Shew_0068 at 81.937 kb on - strand, within Shew_0068 at 82.068 kb on - strand, within Shew_0068 at 82.195 kb on + strand, within Shew_0068 at 82.386 kb on + strand at 82.389 kb on - strand at 82.413 kb on + strand at 82.416 kb on - strand at 82.471 kb on + strand at 82.471 kb on + strand at 82.671 kb on - strand, within Shew_0069 at 82.671 kb on - strand, within Shew_0069 at 82.853 kb on - strand, within Shew_0069 at 82.881 kb on - strand, within Shew_0069 at 83.228 kb on + strand, within Shew_0069 at 83.235 kb on - strand, within Shew_0069 at 83.235 kb on - strand, within Shew_0069 at 83.309 kb on - strand, within Shew_0069
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 80,040 + Shew_0066 0.42 -0.5 80,040 + Shew_0066 0.42 +0.0 80,048 - Shew_0066 0.45 +1.0 80,110 + Shew_0066 0.61 -1.3 80,118 - Shew_0066 0.64 -0.6 80,118 - Shew_0066 0.64 +0.1 80,209 - Shew_0066 0.89 +0.0 80,806 + +0.9 80,914 - -0.5 81,325 + Shew_0068 0.25 +0.6 81,361 + Shew_0068 0.28 +0.3 81,361 + Shew_0068 0.28 -1.2 81,399 + Shew_0068 0.31 +0.2 81,399 + Shew_0068 0.31 -0.1 81,407 - Shew_0068 0.31 +0.2 81,690 - Shew_0068 0.52 +0.3 81,797 + Shew_0068 0.59 +3.0 81,871 + Shew_0068 0.65 +0.2 81,888 - Shew_0068 0.66 -0.6 81,937 - Shew_0068 0.70 +0.1 82,068 - Shew_0068 0.79 -0.3 82,195 + Shew_0068 0.88 -0.2 82,386 + -1.2 82,389 - -0.1 82,413 + -0.3 82,416 - +1.2 82,471 + +1.4 82,471 + +1.5 82,671 - Shew_0069 0.25 -4.0 82,671 - Shew_0069 0.25 +1.3 82,853 - Shew_0069 0.41 -0.1 82,881 - Shew_0069 0.44 -0.1 83,228 + Shew_0069 0.75 -0.2 83,235 - Shew_0069 0.76 +1.1 83,235 - Shew_0069 0.76 +0.5 83,309 - Shew_0069 0.82 +0.3
Or see this region's nucleotide sequence