Experiment: Anaero. fumarate as E acceptor
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt glyQ and Shew_0011 are separated by 109 nucleotides Shew_0011 and Shew_0012 are separated by 5 nucleotides Shew_0012 and Shew_0013 are separated by 212 nucleotides
Shew_0010: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 11,589 to 12,494
glyQ
Shew_0011: Shew_0011 - DNA-3-methyladenine glycosylase I (RefSeq), at 12,604 to 13,173
_0011
Shew_0012: Shew_0012 - hypothetical protein (RefSeq), at 13,179 to 13,859
_0012
Shew_0013: Shew_0013 - amidohydrolase (RefSeq), at 14,072 to 17,275
_0013
Position (kb) 13
14 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 12.666 kb on + strand, within Shew_0011 at 12.690 kb on - strand, within Shew_0011 at 12.744 kb on - strand, within Shew_0011 at 12.828 kb on + strand, within Shew_0011 at 12.836 kb on - strand, within Shew_0011 at 12.875 kb on + strand, within Shew_0011 at 12.883 kb on - strand, within Shew_0011 at 12.986 kb on - strand, within Shew_0011 at 13.201 kb on + strand at 13.245 kb on - strand at 13.247 kb on + strand, within Shew_0012 at 13.584 kb on - strand, within Shew_0012 at 13.675 kb on + strand, within Shew_0012 at 13.726 kb on + strand, within Shew_0012 at 13.726 kb on + strand, within Shew_0012 at 13.726 kb on + strand, within Shew_0012 at 13.726 kb on + strand, within Shew_0012 at 13.734 kb on - strand, within Shew_0012 at 13.734 kb on - strand, within Shew_0012 at 13.734 kb on - strand, within Shew_0012 at 13.786 kb on - strand, within Shew_0012 at 13.876 kb on + strand at 13.882 kb on - strand at 14.171 kb on - strand at 14.311 kb on + strand at 14.453 kb on + strand, within Shew_0013 at 14.490 kb on + strand, within Shew_0013 at 14.498 kb on - strand, within Shew_0013 at 14.530 kb on + strand, within Shew_0013 at 14.719 kb on + strand, within Shew_0013 at 14.726 kb on - strand, within Shew_0013 at 14.815 kb on + strand, within Shew_0013 at 14.830 kb on + strand, within Shew_0013
Per-strain Table
Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor remove 12,666 + Shew_0011 0.11 +0.1 12,690 - Shew_0011 0.15 -0.0 12,744 - Shew_0011 0.25 -0.3 12,828 + Shew_0011 0.39 +0.1 12,836 - Shew_0011 0.41 +0.4 12,875 + Shew_0011 0.48 -0.1 12,883 - Shew_0011 0.49 -0.8 12,986 - Shew_0011 0.67 +0.3 13,201 + -0.6 13,245 - +0.6 13,247 + Shew_0012 0.10 +1.5 13,584 - Shew_0012 0.59 +0.3 13,675 + Shew_0012 0.73 -1.2 13,726 + Shew_0012 0.80 -0.1 13,726 + Shew_0012 0.80 -0.8 13,726 + Shew_0012 0.80 -0.0 13,726 + Shew_0012 0.80 -0.7 13,734 - Shew_0012 0.81 -0.9 13,734 - Shew_0012 0.81 +0.3 13,734 - Shew_0012 0.81 -4.0 13,786 - Shew_0012 0.89 +0.3 13,876 + +0.0 13,882 - -0.7 14,171 - -0.4 14,311 + +0.1 14,453 + Shew_0013 0.12 -1.3 14,490 + Shew_0013 0.13 -0.2 14,498 - Shew_0013 0.13 +1.2 14,530 + Shew_0013 0.14 +1.0 14,719 + Shew_0013 0.20 +0.1 14,726 - Shew_0013 0.20 +0.9 14,815 + Shew_0013 0.23 -0.1 14,830 + Shew_0013 0.24 -0.3
Or see this region's nucleotide sequence