Strain Fitness in Shewanella loihica PV-4 around Shew_0010

Experiment: Anaero. fumarate as E acceptor

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntglyS and glyQ are separated by 12 nucleotidesglyQ and Shew_0011 are separated by 109 nucleotidesShew_0011 and Shew_0012 are separated by 5 nucleotides Shew_0009: glyS - glycyl-tRNA synthetase subunit beta (RefSeq), at 9,507 to 11,576 glyS Shew_0010: glyQ - glycyl-tRNA synthetase subunit alpha (RefSeq), at 11,589 to 12,494 glyQ Shew_0011: Shew_0011 - DNA-3-methyladenine glycosylase I (RefSeq), at 12,604 to 13,173 _0011 Shew_0012: Shew_0012 - hypothetical protein (RefSeq), at 13,179 to 13,859 _0012 Position (kb) 11 12 13Strain fitness (log2 ratio) -1 0 1at 12.666 kb on + strand, within Shew_0011at 12.690 kb on - strand, within Shew_0011at 12.744 kb on - strand, within Shew_0011at 12.828 kb on + strand, within Shew_0011at 12.836 kb on - strand, within Shew_0011at 12.875 kb on + strand, within Shew_0011at 12.883 kb on - strand, within Shew_0011at 12.986 kb on - strand, within Shew_0011at 13.201 kb on + strandat 13.245 kb on - strandat 13.247 kb on + strand, within Shew_0012

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Anaero. fumarate as E acceptor
remove
12,666 + Shew_0011 0.11 +0.1
12,690 - Shew_0011 0.15 -0.0
12,744 - Shew_0011 0.25 -0.3
12,828 + Shew_0011 0.39 +0.1
12,836 - Shew_0011 0.41 +0.4
12,875 + Shew_0011 0.48 -0.1
12,883 - Shew_0011 0.49 -0.8
12,986 - Shew_0011 0.67 +0.3
13,201 + -0.6
13,245 - +0.6
13,247 + Shew_0012 0.10 +1.5

Or see this region's nucleotide sequence