Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_2865

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_2863 and Dshi_2864 are separated by 2 nucleotidesDshi_2864 and Dshi_2865 are separated by 145 nucleotidesDshi_2865 and Dshi_2866 are separated by 16 nucleotidesDshi_2866 and Dshi_2867 are separated by 11 nucleotides Dshi_2863: Dshi_2863 - hypothetical protein (RefSeq), at 3,019,899 to 3,020,720 _2863 Dshi_2864: Dshi_2864 - hypothetical protein (RefSeq), at 3,020,723 to 3,021,550 _2864 Dshi_2865: Dshi_2865 - succinate dehydrogenase, flavoprotein subunit (RefSeq), at 3,021,696 to 3,023,498 _2865 Dshi_2866: Dshi_2866 - Succinate dehydrogenase hydrophobic membrane anchor (RefSeq), at 3,023,515 to 3,023,886 _2866 Dshi_2867: Dshi_2867 - Succinate dehydrogenase cytochrome b556 subunit (RefSeq), at 3,023,898 to 3,024,281 _2867 Position (kb) 3021 3022 3023 3024Strain fitness (log2 ratio) -2 -1 0 1at 3020.737 kb on - strandat 3020.747 kb on - strandat 3020.881 kb on + strand, within Dshi_2864at 3020.966 kb on - strand, within Dshi_2864at 3021.118 kb on + strand, within Dshi_2864at 3021.223 kb on - strand, within Dshi_2864at 3021.429 kb on + strand, within Dshi_2864at 3021.439 kb on - strand, within Dshi_2864at 3021.492 kb on - strandat 3021.559 kb on + strandat 3021.559 kb on + strandat 3021.570 kb on + strandat 3021.608 kb on + strandat 3021.613 kb on + strandat 3021.613 kb on + strandat 3021.647 kb on - strandat 3021.666 kb on - strandat 3021.667 kb on - strandat 3024.467 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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3,020,737 - -0.5
3,020,747 - -0.8
3,020,881 + Dshi_2864 0.19 -2.7
3,020,966 - Dshi_2864 0.29 -0.8
3,021,118 + Dshi_2864 0.48 -0.1
3,021,223 - Dshi_2864 0.60 -0.1
3,021,429 + Dshi_2864 0.85 -0.1
3,021,439 - Dshi_2864 0.86 -2.0
3,021,492 - -1.5
3,021,559 + -0.9
3,021,559 + -1.1
3,021,570 + -0.2
3,021,608 + -0.3
3,021,613 + -0.9
3,021,613 + -2.5
3,021,647 - -0.9
3,021,666 - +1.7
3,021,667 - -1.0
3,024,467 - +0.1

Or see this region's nucleotide sequence