Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0791 and Dshi_0792 are separated by 58 nucleotides Dshi_0792 and Dshi_0793 are separated by 167 nucleotides Dshi_0793 and Dshi_0794 are separated by 145 nucleotides Dshi_0794 and Dshi_0795 are separated by 1 nucleotides
Dshi_0791: Dshi_0791 - protein of unknown function DUF541 (RefSeq), at 798,789 to 799,526
_0791
Dshi_0792: Dshi_0792 - hypothetical protein (RefSeq), at 799,585 to 799,959
_0792
Dshi_0793: Dshi_0793 - O-acetylhomoserine/O-acetylserine sulfhydrylase (RefSeq), at 800,127 to 801,422
_0793
Dshi_0794: Dshi_0794 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 801,568 to 802,155
_0794
Dshi_0795: Dshi_0795 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq), at 802,157 to 802,795
_0795
Position (kb) 800
801
802 Strain fitness (log2 ratio) -2
-1
0
1 at 799.180 kb on + strand, within Dshi_0791 at 799.588 kb on + strand at 799.657 kb on - strand, within Dshi_0792 at 800.111 kb on + strand at 800.119 kb on - strand at 800.253 kb on - strand at 800.253 kb on - strand at 800.345 kb on + strand, within Dshi_0793 at 800.382 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.424 kb on - strand, within Dshi_0793 at 800.424 kb on - strand, within Dshi_0793 at 800.424 kb on - strand, within Dshi_0793 at 800.458 kb on - strand, within Dshi_0793 at 800.564 kb on + strand, within Dshi_0793 at 800.567 kb on - strand, within Dshi_0793 at 800.586 kb on - strand, within Dshi_0793 at 800.648 kb on + strand, within Dshi_0793 at 800.843 kb on + strand, within Dshi_0793 at 800.843 kb on + strand, within Dshi_0793 at 800.851 kb on - strand, within Dshi_0793 at 800.851 kb on - strand, within Dshi_0793 at 800.854 kb on + strand, within Dshi_0793 at 801.082 kb on - strand, within Dshi_0793 at 801.115 kb on + strand, within Dshi_0793 at 801.144 kb on - strand, within Dshi_0793 at 801.149 kb on - strand, within Dshi_0793 at 801.224 kb on + strand, within Dshi_0793 at 801.231 kb on - strand, within Dshi_0793 at 801.306 kb on + strand at 801.314 kb on - strand at 801.381 kb on - strand at 801.397 kb on + strand at 801.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 799,180 + Dshi_0791 0.53 -0.6 799,588 + -2.0 799,657 - Dshi_0792 0.19 -0.6 800,111 + -2.5 800,119 - -0.4 800,253 - -1.2 800,253 - +0.4 800,345 + Dshi_0793 0.17 -0.0 800,382 + Dshi_0793 0.20 +0.6 800,416 + Dshi_0793 0.22 +0.6 800,416 + Dshi_0793 0.22 -0.3 800,416 + Dshi_0793 0.22 -1.1 800,416 + Dshi_0793 0.22 -0.7 800,424 - Dshi_0793 0.23 -0.1 800,424 - Dshi_0793 0.23 -0.1 800,424 - Dshi_0793 0.23 +0.5 800,458 - Dshi_0793 0.26 +0.0 800,564 + Dshi_0793 0.34 -1.7 800,567 - Dshi_0793 0.34 -0.2 800,586 - Dshi_0793 0.35 -0.4 800,648 + Dshi_0793 0.40 -0.8 800,843 + Dshi_0793 0.55 -1.2 800,843 + Dshi_0793 0.55 +1.5 800,851 - Dshi_0793 0.56 -0.1 800,851 - Dshi_0793 0.56 +0.3 800,854 + Dshi_0793 0.56 -1.0 801,082 - Dshi_0793 0.74 -0.1 801,115 + Dshi_0793 0.76 -1.8 801,144 - Dshi_0793 0.78 -0.3 801,149 - Dshi_0793 0.79 -1.2 801,224 + Dshi_0793 0.85 -0.2 801,231 - Dshi_0793 0.85 -0.8 801,306 + -0.0 801,314 - +1.3 801,381 - -1.2 801,397 + +0.2 801,425 - +0.4
Or see this region's nucleotide sequence