Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0657

Experiment: Cytosine (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0656 and Dshi_0657 are separated by 1 nucleotidesDshi_0657 and Dshi_0658 overlap by 4 nucleotides Dshi_0656: Dshi_0656 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 658,895 to 659,992 _0656 Dshi_0657: Dshi_0657 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 659,994 to 661,172 _0657 Dshi_0658: Dshi_0658 - ABC transporter related (RefSeq), at 661,169 to 662,770 _0658 Position (kb) 659 660 661 662Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 659.025 kb on - strand, within Dshi_0656at 659.087 kb on + strand, within Dshi_0656at 659.095 kb on - strand, within Dshi_0656at 659.123 kb on + strand, within Dshi_0656at 659.124 kb on + strand, within Dshi_0656at 659.132 kb on - strand, within Dshi_0656at 659.132 kb on - strand, within Dshi_0656at 659.254 kb on + strand, within Dshi_0656at 659.310 kb on + strand, within Dshi_0656at 659.310 kb on + strand, within Dshi_0656at 659.331 kb on + strand, within Dshi_0656at 659.343 kb on - strand, within Dshi_0656at 659.369 kb on + strand, within Dshi_0656at 659.400 kb on + strand, within Dshi_0656at 659.486 kb on + strand, within Dshi_0656at 659.593 kb on - strand, within Dshi_0656at 659.608 kb on - strand, within Dshi_0656at 659.623 kb on - strand, within Dshi_0656at 659.684 kb on + strand, within Dshi_0656at 659.711 kb on + strand, within Dshi_0656at 659.711 kb on + strand, within Dshi_0656at 659.778 kb on - strand, within Dshi_0656at 659.820 kb on + strand, within Dshi_0656at 659.820 kb on + strand, within Dshi_0656at 659.847 kb on - strand, within Dshi_0656at 659.944 kb on - strandat 659.949 kb on - strandat 660.010 kb on - strandat 660.011 kb on + strandat 660.014 kb on - strandat 660.316 kb on + strand, within Dshi_0657at 660.334 kb on + strand, within Dshi_0657at 660.342 kb on - strand, within Dshi_0657at 660.368 kb on + strand, within Dshi_0657at 660.416 kb on + strand, within Dshi_0657at 660.433 kb on - strand, within Dshi_0657at 660.633 kb on + strand, within Dshi_0657at 660.756 kb on - strand, within Dshi_0657at 660.772 kb on - strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.792 kb on + strand, within Dshi_0657at 660.810 kb on - strand, within Dshi_0657at 660.900 kb on + strand, within Dshi_0657at 661.235 kb on - strandat 661.254 kb on + strandat 661.254 kb on + strandat 661.368 kb on - strand, within Dshi_0658at 661.394 kb on - strand, within Dshi_0658at 661.521 kb on + strand, within Dshi_0658at 661.673 kb on - strand, within Dshi_0658at 661.811 kb on - strand, within Dshi_0658at 661.811 kb on - strand, within Dshi_0658at 661.853 kb on - strand, within Dshi_0658at 661.886 kb on + strand, within Dshi_0658at 661.991 kb on - strand, within Dshi_0658at 662.026 kb on + strand, within Dshi_0658at 662.103 kb on + strand, within Dshi_0658at 662.104 kb on - strand, within Dshi_0658at 662.172 kb on + strand, within Dshi_0658

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Per-strain Table

Position Strand Gene LocusTag Fraction Cytosine (N)
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659,025 - Dshi_0656 0.12 -3.8
659,087 + Dshi_0656 0.17 -0.7
659,095 - Dshi_0656 0.18 -2.0
659,123 + Dshi_0656 0.21 -0.8
659,124 + Dshi_0656 0.21 +0.1
659,132 - Dshi_0656 0.22 -1.2
659,132 - Dshi_0656 0.22 -1.2
659,254 + Dshi_0656 0.33 -2.2
659,310 + Dshi_0656 0.38 -0.9
659,310 + Dshi_0656 0.38 -1.6
659,331 + Dshi_0656 0.40 -1.7
659,343 - Dshi_0656 0.41 +0.0
659,369 + Dshi_0656 0.43 -0.9
659,400 + Dshi_0656 0.46 -2.9
659,486 + Dshi_0656 0.54 -0.0
659,593 - Dshi_0656 0.64 -1.0
659,608 - Dshi_0656 0.65 -1.3
659,623 - Dshi_0656 0.66 -1.8
659,684 + Dshi_0656 0.72 -1.3
659,711 + Dshi_0656 0.74 -1.0
659,711 + Dshi_0656 0.74 -1.9
659,778 - Dshi_0656 0.80 -1.7
659,820 + Dshi_0656 0.84 -1.5
659,820 + Dshi_0656 0.84 -1.1
659,847 - Dshi_0656 0.87 -0.2
659,944 - -0.3
659,949 - -0.8
660,010 - +0.3
660,011 + -0.7
660,014 - -0.0
660,316 + Dshi_0657 0.27 -1.6
660,334 + Dshi_0657 0.29 -1.3
660,342 - Dshi_0657 0.30 -0.6
660,368 + Dshi_0657 0.32 -1.2
660,416 + Dshi_0657 0.36 -1.0
660,433 - Dshi_0657 0.37 -0.8
660,633 + Dshi_0657 0.54 -1.4
660,756 - Dshi_0657 0.65 -2.2
660,772 - Dshi_0657 0.66 -1.4
660,792 + Dshi_0657 0.68 -1.6
660,792 + Dshi_0657 0.68 -2.8
660,792 + Dshi_0657 0.68 -1.5
660,810 - Dshi_0657 0.69 -1.6
660,900 + Dshi_0657 0.77 -1.6
661,235 - -0.4
661,254 + -1.6
661,254 + -1.6
661,368 - Dshi_0658 0.12 -2.7
661,394 - Dshi_0658 0.14 -1.6
661,521 + Dshi_0658 0.22 -0.7
661,673 - Dshi_0658 0.31 -0.4
661,811 - Dshi_0658 0.40 +0.5
661,811 - Dshi_0658 0.40 -3.0
661,853 - Dshi_0658 0.43 -2.1
661,886 + Dshi_0658 0.45 -1.1
661,991 - Dshi_0658 0.51 -3.1
662,026 + Dshi_0658 0.53 -0.1
662,103 + Dshi_0658 0.58 -2.9
662,104 - Dshi_0658 0.58 -0.4
662,172 + Dshi_0658 0.63 -0.6

Or see this region's nucleotide sequence