Experiment: Cytosine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0239 and Dshi_0240 overlap by 4 nucleotides Dshi_0240 and Dshi_0241 are separated by 148 nucleotides Dshi_0241 and Dshi_0242 are separated by 85 nucleotides
Dshi_0239: Dshi_0239 - Aspartate dehydrogenase (RefSeq), at 237,729 to 238,490
_0239
Dshi_0240: Dshi_0240 - Glutathione S-transferase domain (RefSeq), at 238,487 to 239,185
_0240
Dshi_0241: Dshi_0241 - large conductance mechanosensitive channel protein (RefSeq), at 239,334 to 239,729
_0241
Dshi_0242: Dshi_0242 - fatty acid hydroxylase (RefSeq), at 239,815 to 240,792
_0242
Position (kb) 239
240 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 238.379 kb on + strand, within Dshi_0239 at 238.388 kb on + strand, within Dshi_0239 at 238.425 kb on - strand at 238.481 kb on - strand at 238.566 kb on - strand, within Dshi_0240 at 238.622 kb on + strand, within Dshi_0240 at 238.704 kb on + strand, within Dshi_0240 at 239.072 kb on - strand, within Dshi_0240 at 239.086 kb on + strand, within Dshi_0240 at 239.086 kb on + strand, within Dshi_0240 at 239.086 kb on + strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.094 kb on - strand, within Dshi_0240 at 239.120 kb on - strand at 239.120 kb on - strand at 239.143 kb on - strand at 239.176 kb on + strand at 239.183 kb on + strand at 239.250 kb on + strand at 239.303 kb on - strand at 239.316 kb on + strand at 239.316 kb on + strand at 239.316 kb on + strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.324 kb on - strand at 239.385 kb on + strand, within Dshi_0241 at 239.474 kb on - strand, within Dshi_0241 at 239.500 kb on + strand, within Dshi_0241 at 239.500 kb on + strand, within Dshi_0241 at 239.500 kb on + strand, within Dshi_0241 at 239.508 kb on - strand, within Dshi_0241 at 239.508 kb on - strand, within Dshi_0241 at 239.508 kb on - strand, within Dshi_0241 at 239.517 kb on + strand, within Dshi_0241 at 239.723 kb on + strand at 239.726 kb on - strand at 239.731 kb on - strand at 239.778 kb on + strand at 239.778 kb on + strand at 239.785 kb on - strand at 239.813 kb on + strand at 239.894 kb on - strand at 239.900 kb on + strand at 239.931 kb on - strand, within Dshi_0242 at 239.951 kb on - strand, within Dshi_0242 at 240.001 kb on - strand, within Dshi_0242 at 240.062 kb on - strand, within Dshi_0242 at 240.062 kb on - strand, within Dshi_0242 at 240.229 kb on - strand, within Dshi_0242 at 240.256 kb on + strand, within Dshi_0242 at 240.264 kb on - strand, within Dshi_0242 at 240.341 kb on + strand, within Dshi_0242 at 240.365 kb on + strand, within Dshi_0242 at 240.378 kb on - strand, within Dshi_0242 at 240.477 kb on - strand, within Dshi_0242 at 240.483 kb on + strand, within Dshi_0242 at 240.491 kb on + strand, within Dshi_0242 at 240.518 kb on + strand, within Dshi_0242 at 240.656 kb on - strand, within Dshi_0242
Per-strain Table
Position Strand Gene LocusTag Fraction Cytosine (N) remove 238,379 + Dshi_0239 0.85 -2.8 238,388 + Dshi_0239 0.86 -0.2 238,425 - +0.1 238,481 - -0.8 238,566 - Dshi_0240 0.11 +1.6 238,622 + Dshi_0240 0.19 +0.2 238,704 + Dshi_0240 0.31 -0.5 239,072 - Dshi_0240 0.84 -2.0 239,086 + Dshi_0240 0.86 +0.6 239,086 + Dshi_0240 0.86 -0.5 239,086 + Dshi_0240 0.86 -0.2 239,094 - Dshi_0240 0.87 +0.3 239,094 - Dshi_0240 0.87 -1.1 239,094 - Dshi_0240 0.87 +0.6 239,094 - Dshi_0240 0.87 +0.4 239,094 - Dshi_0240 0.87 +0.6 239,120 - +1.4 239,120 - +1.1 239,143 - +0.6 239,176 + +0.6 239,183 + -0.0 239,250 + -1.8 239,303 - -0.0 239,316 + -1.0 239,316 + -0.7 239,316 + -0.1 239,324 - -0.4 239,324 - -1.1 239,324 - -2.7 239,324 - -0.2 239,324 - -1.2 239,385 + Dshi_0241 0.13 -1.4 239,474 - Dshi_0241 0.35 -1.4 239,500 + Dshi_0241 0.42 -0.7 239,500 + Dshi_0241 0.42 -0.8 239,500 + Dshi_0241 0.42 -0.0 239,508 - Dshi_0241 0.44 +0.4 239,508 - Dshi_0241 0.44 -1.5 239,508 - Dshi_0241 0.44 -0.7 239,517 + Dshi_0241 0.46 -1.5 239,723 + +0.1 239,726 - -1.2 239,731 - -0.6 239,778 + -0.3 239,778 + -1.2 239,785 - +0.4 239,813 + -1.0 239,894 - -0.1 239,900 + +0.4 239,931 - Dshi_0242 0.12 -0.8 239,951 - Dshi_0242 0.14 -1.0 240,001 - Dshi_0242 0.19 +0.2 240,062 - Dshi_0242 0.25 -0.0 240,062 - Dshi_0242 0.25 +1.6 240,229 - Dshi_0242 0.42 -0.3 240,256 + Dshi_0242 0.45 +1.4 240,264 - Dshi_0242 0.46 -0.0 240,341 + Dshi_0242 0.54 -0.0 240,365 + Dshi_0242 0.56 -0.4 240,378 - Dshi_0242 0.58 -0.4 240,477 - Dshi_0242 0.68 -1.1 240,483 + Dshi_0242 0.68 -1.3 240,491 + Dshi_0242 0.69 +0.2 240,518 + Dshi_0242 0.72 -0.2 240,656 - Dshi_0242 0.86 -1.0
Or see this region's nucleotide sequence