Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04495

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04485 and MMP_RS04490 are separated by 149 nucleotidesMMP_RS04490 and MMP_RS04495 are separated by 8 nucleotidesMMP_RS04495 and MMP_RS04500 are separated by 57 nucleotides MMP_RS04485: MMP_RS04485 - putative beta-lysine N-acetyltransferase, at 853,539 to 854,363 _RS04485 MMP_RS04490: MMP_RS04490 - CBS domain-containing protein, at 854,513 to 854,989 _RS04490 MMP_RS04495: MMP_RS04495 - cation:proton antiporter, at 854,998 to 856,164 _RS04495 MMP_RS04500: MMP_RS04500 - adenosylmethionine--8-amino-7-oxononanoate transaminase, at 856,222 to 857,625 _RS04500 Position (kb) 854 855 856 857Strain fitness (log2 ratio) -1 0 1at 854.007 kb on + strand, within MMP_RS04485at 854.007 kb on + strand, within MMP_RS04485at 854.008 kb on - strand, within MMP_RS04485at 854.009 kb on + strand, within MMP_RS04485at 854.011 kb on - strand, within MMP_RS04485at 854.032 kb on - strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.097 kb on + strand, within MMP_RS04485at 854.167 kb on + strand, within MMP_RS04485at 854.175 kb on - strand, within MMP_RS04485at 854.177 kb on - strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.178 kb on + strand, within MMP_RS04485at 854.279 kb on - strand, within MMP_RS04485at 854.303 kb on - strandat 854.306 kb on - strandat 854.306 kb on - strandat 854.346 kb on - strandat 854.425 kb on + strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.428 kb on - strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.429 kb on + strandat 854.430 kb on - strandat 854.431 kb on + strandat 854.431 kb on + strandat 854.481 kb on - strandat 854.486 kb on - strandat 854.492 kb on + strandat 854.492 kb on + strandat 854.619 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.638 kb on - strand, within MMP_RS04490at 854.639 kb on + strand, within MMP_RS04490at 854.665 kb on + strand, within MMP_RS04490at 854.698 kb on + strand, within MMP_RS04490at 854.706 kb on + strand, within MMP_RS04490at 854.756 kb on + strand, within MMP_RS04490at 854.768 kb on + strand, within MMP_RS04490at 854.837 kb on + strand, within MMP_RS04490at 854.841 kb on - strand, within MMP_RS04490at 854.849 kb on + strand, within MMP_RS04490at 854.862 kb on - strand, within MMP_RS04490at 854.862 kb on - strand, within MMP_RS04490at 854.888 kb on - strand, within MMP_RS04490at 854.926 kb on - strand, within MMP_RS04490at 854.926 kb on - strand, within MMP_RS04490at 854.927 kb on + strand, within MMP_RS04490at 854.931 kb on - strand, within MMP_RS04490at 854.965 kb on - strandat 854.965 kb on - strandat 854.966 kb on + strandat 855.040 kb on + strandat 855.041 kb on - strandat 855.066 kb on + strandat 855.230 kb on - strand, within MMP_RS04495at 855.262 kb on + strand, within MMP_RS04495at 855.540 kb on + strand, within MMP_RS04495at 855.548 kb on - strand, within MMP_RS04495at 855.586 kb on - strand, within MMP_RS04495at 855.825 kb on + strand, within MMP_RS04495at 855.835 kb on - strand, within MMP_RS04495at 855.857 kb on - strand, within MMP_RS04495at 855.857 kb on - strand, within MMP_RS04495at 855.887 kb on - strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.888 kb on + strand, within MMP_RS04495at 855.911 kb on - strand, within MMP_RS04495at 856.023 kb on + strand, within MMP_RS04495at 856.114 kb on + strandat 856.128 kb on - strandat 856.128 kb on - strandat 856.129 kb on + strandat 856.130 kb on - strandat 856.131 kb on + strandat 856.166 kb on + strandat 856.167 kb on - strandat 856.167 kb on - strandat 856.167 kb on - strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.168 kb on + strandat 856.170 kb on - strandat 856.170 kb on - strandat 856.171 kb on + strandat 856.171 kb on + strandat 856.173 kb on + strandat 856.173 kb on + strandat 856.241 kb on + strandat 856.350 kb on + strandat 856.397 kb on - strand, within MMP_RS04500at 856.401 kb on - strand, within MMP_RS04500at 856.402 kb on + strand, within MMP_RS04500at 856.457 kb on - strand, within MMP_RS04500at 856.540 kb on - strand, within MMP_RS04500at 856.600 kb on - strand, within MMP_RS04500at 856.600 kb on - strand, within MMP_RS04500at 856.677 kb on + strand, within MMP_RS04500at 856.678 kb on - strand, within MMP_RS04500at 856.726 kb on + strand, within MMP_RS04500at 856.745 kb on + strand, within MMP_RS04500at 856.763 kb on + strand, within MMP_RS04500at 856.763 kb on + strand, within MMP_RS04500at 856.771 kb on - strand, within MMP_RS04500at 856.840 kb on - strand, within MMP_RS04500at 856.841 kb on + strand, within MMP_RS04500at 856.842 kb on - strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.843 kb on + strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.845 kb on - strand, within MMP_RS04500at 856.905 kb on - strand, within MMP_RS04500at 856.906 kb on + strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.933 kb on - strand, within MMP_RS04500at 856.949 kb on + strand, within MMP_RS04500at 856.963 kb on + strand, within MMP_RS04500at 857.048 kb on - strand, within MMP_RS04500at 857.066 kb on - strand, within MMP_RS04500

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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854,007 + MMP_RS04485 0.57 +0.1
854,007 + MMP_RS04485 0.57 -0.3
854,008 - MMP_RS04485 0.57 +0.1
854,009 + MMP_RS04485 0.57 -0.9
854,011 - MMP_RS04485 0.57 +0.2
854,032 - MMP_RS04485 0.60 -0.2
854,097 + MMP_RS04485 0.68 +0.1
854,097 + MMP_RS04485 0.68 -0.4
854,167 + MMP_RS04485 0.76 -0.0
854,175 - MMP_RS04485 0.77 -0.4
854,177 - MMP_RS04485 0.77 -0.0
854,178 + MMP_RS04485 0.77 +0.3
854,178 + MMP_RS04485 0.77 +0.2
854,178 + MMP_RS04485 0.77 -0.3
854,178 + MMP_RS04485 0.77 +0.2
854,178 + MMP_RS04485 0.77 +0.1
854,279 - MMP_RS04485 0.90 -0.6
854,303 - +0.0
854,306 - -0.2
854,306 - +0.4
854,346 - +0.3
854,425 + -0.2
854,428 - +0.3
854,428 - -0.5
854,428 - +0.2
854,428 - +0.4
854,429 + +0.2
854,429 + -0.4
854,429 + +0.1
854,429 + +0.1
854,429 + +0.3
854,429 + +0.1
854,430 - +0.1
854,431 + -0.3
854,431 + +1.1
854,481 - -0.2
854,486 - -0.4
854,492 + -0.0
854,492 + +0.3
854,619 - MMP_RS04490 0.22 +0.1
854,638 - MMP_RS04490 0.26 -0.0
854,638 - MMP_RS04490 0.26 +0.5
854,638 - MMP_RS04490 0.26 +0.4
854,638 - MMP_RS04490 0.26 +0.5
854,638 - MMP_RS04490 0.26 +0.1
854,639 + MMP_RS04490 0.26 +0.1
854,665 + MMP_RS04490 0.32 +0.6
854,698 + MMP_RS04490 0.39 +0.2
854,706 + MMP_RS04490 0.40 +0.5
854,756 + MMP_RS04490 0.51 +0.4
854,768 + MMP_RS04490 0.53 +0.2
854,837 + MMP_RS04490 0.68 -0.1
854,841 - MMP_RS04490 0.69 +0.1
854,849 + MMP_RS04490 0.70 +0.1
854,862 - MMP_RS04490 0.73 +0.0
854,862 - MMP_RS04490 0.73 -0.2
854,888 - MMP_RS04490 0.79 -0.7
854,926 - MMP_RS04490 0.87 -0.5
854,926 - MMP_RS04490 0.87 +0.0
854,927 + MMP_RS04490 0.87 +0.4
854,931 - MMP_RS04490 0.88 -0.4
854,965 - +0.2
854,965 - -0.5
854,966 + -0.1
855,040 + +0.0
855,041 - -0.4
855,066 + -0.7
855,230 - MMP_RS04495 0.20 -0.3
855,262 + MMP_RS04495 0.23 +0.1
855,540 + MMP_RS04495 0.46 +0.5
855,548 - MMP_RS04495 0.47 +0.1
855,586 - MMP_RS04495 0.50 -0.1
855,825 + MMP_RS04495 0.71 +0.0
855,835 - MMP_RS04495 0.72 -0.1
855,857 - MMP_RS04495 0.74 -0.7
855,857 - MMP_RS04495 0.74 +0.0
855,887 - MMP_RS04495 0.76 -0.5
855,888 + MMP_RS04495 0.76 +0.1
855,888 + MMP_RS04495 0.76 -0.1
855,888 + MMP_RS04495 0.76 -0.3
855,911 - MMP_RS04495 0.78 +0.0
856,023 + MMP_RS04495 0.88 -0.5
856,114 + -0.2
856,128 - +0.2
856,128 - +0.1
856,129 + +1.0
856,130 - +0.5
856,131 + +0.3
856,166 + +0.1
856,167 - +0.1
856,167 - -0.1
856,167 - +0.1
856,168 + -0.1
856,168 + -0.2
856,168 + -0.1
856,168 + -0.2
856,170 - -0.1
856,170 - +0.3
856,171 + +0.6
856,171 + +0.3
856,173 + +0.7
856,173 + -0.1
856,241 + -0.2
856,350 + -0.4
856,397 - MMP_RS04500 0.12 -0.8
856,401 - MMP_RS04500 0.13 -0.5
856,402 + MMP_RS04500 0.13 +0.0
856,457 - MMP_RS04500 0.17 -0.6
856,540 - MMP_RS04500 0.23 -0.3
856,600 - MMP_RS04500 0.27 +0.4
856,600 - MMP_RS04500 0.27 -0.3
856,677 + MMP_RS04500 0.32 +0.1
856,678 - MMP_RS04500 0.32 -0.3
856,726 + MMP_RS04500 0.36 -0.7
856,745 + MMP_RS04500 0.37 -0.0
856,763 + MMP_RS04500 0.39 -0.7
856,763 + MMP_RS04500 0.39 -0.9
856,771 - MMP_RS04500 0.39 -1.2
856,840 - MMP_RS04500 0.44 -0.1
856,841 + MMP_RS04500 0.44 +0.6
856,842 - MMP_RS04500 0.44 -0.5
856,843 + MMP_RS04500 0.44 -0.6
856,843 + MMP_RS04500 0.44 -0.8
856,843 + MMP_RS04500 0.44 -0.6
856,843 + MMP_RS04500 0.44 -0.8
856,843 + MMP_RS04500 0.44 -0.1
856,845 - MMP_RS04500 0.44 -0.8
856,845 - MMP_RS04500 0.44 -0.9
856,905 - MMP_RS04500 0.49 -0.4
856,906 + MMP_RS04500 0.49 -0.5
856,933 - MMP_RS04500 0.51 -0.6
856,933 - MMP_RS04500 0.51 -0.1
856,949 + MMP_RS04500 0.52 -0.4
856,963 + MMP_RS04500 0.53 -0.4
857,048 - MMP_RS04500 0.59 -0.5
857,066 - MMP_RS04500 0.60 -0.9

Or see this region's nucleotide sequence