Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04155

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04150 and MMP_RS04155 are separated by 58 nucleotidesMMP_RS04155 and MMP_RS04160 are separated by 71 nucleotides MMP_RS04150: MMP_RS04150 - MFS transporter, at 788,112 to 789,326 _RS04150 MMP_RS04155: MMP_RS04155 - MFS transporter, at 789,385 to 790,590 _RS04155 MMP_RS04160: MMP_RS04160 - hypothetical protein, at 790,662 to 791,330 _RS04160 Position (kb) 789 790 791Strain fitness (log2 ratio) -1 0 1at 788.404 kb on - strand, within MMP_RS04150at 788.405 kb on + strand, within MMP_RS04150at 788.468 kb on - strand, within MMP_RS04150at 788.612 kb on - strand, within MMP_RS04150at 788.821 kb on - strand, within MMP_RS04150at 788.825 kb on - strand, within MMP_RS04150at 788.825 kb on - strand, within MMP_RS04150at 788.829 kb on - strand, within MMP_RS04150at 788.830 kb on + strand, within MMP_RS04150at 788.863 kb on - strand, within MMP_RS04150at 789.056 kb on - strand, within MMP_RS04150at 789.057 kb on + strand, within MMP_RS04150at 789.230 kb on - strandat 789.311 kb on - strandat 789.324 kb on - strandat 789.334 kb on + strandat 789.339 kb on - strandat 789.340 kb on + strandat 789.340 kb on + strandat 789.340 kb on + strandat 789.340 kb on + strandat 789.404 kb on - strandat 789.404 kb on - strandat 789.429 kb on + strandat 789.490 kb on + strandat 789.496 kb on - strandat 789.497 kb on + strandat 789.511 kb on + strand, within MMP_RS04155at 789.516 kb on - strand, within MMP_RS04155at 789.517 kb on + strand, within MMP_RS04155at 789.517 kb on + strand, within MMP_RS04155at 789.550 kb on - strand, within MMP_RS04155at 789.551 kb on + strand, within MMP_RS04155at 789.551 kb on + strand, within MMP_RS04155at 789.558 kb on + strand, within MMP_RS04155at 789.566 kb on - strand, within MMP_RS04155at 789.567 kb on + strand, within MMP_RS04155at 789.567 kb on + strand, within MMP_RS04155at 789.631 kb on + strand, within MMP_RS04155at 789.662 kb on - strand, within MMP_RS04155at 789.663 kb on + strand, within MMP_RS04155at 789.663 kb on + strand, within MMP_RS04155at 789.670 kb on - strand, within MMP_RS04155at 789.671 kb on + strand, within MMP_RS04155at 789.747 kb on - strand, within MMP_RS04155at 789.748 kb on + strand, within MMP_RS04155at 789.748 kb on + strand, within MMP_RS04155at 789.754 kb on - strand, within MMP_RS04155at 789.754 kb on - strand, within MMP_RS04155at 789.754 kb on - strand, within MMP_RS04155at 789.755 kb on + strand, within MMP_RS04155at 789.755 kb on + strand, within MMP_RS04155at 789.755 kb on + strand, within MMP_RS04155at 789.757 kb on + strand, within MMP_RS04155at 789.894 kb on + strand, within MMP_RS04155at 789.895 kb on - strand, within MMP_RS04155at 789.896 kb on + strand, within MMP_RS04155at 789.896 kb on + strand, within MMP_RS04155at 789.897 kb on - strand, within MMP_RS04155at 789.897 kb on - strand, within MMP_RS04155at 789.897 kb on - strand, within MMP_RS04155at 789.903 kb on + strand, within MMP_RS04155at 790.123 kb on + strand, within MMP_RS04155at 790.228 kb on + strand, within MMP_RS04155at 790.266 kb on - strand, within MMP_RS04155at 790.270 kb on - strand, within MMP_RS04155at 790.418 kb on + strand, within MMP_RS04155at 790.419 kb on - strand, within MMP_RS04155at 790.420 kb on + strand, within MMP_RS04155at 790.424 kb on - strand, within MMP_RS04155at 790.452 kb on - strand, within MMP_RS04155at 790.452 kb on - strand, within MMP_RS04155at 790.453 kb on + strand, within MMP_RS04155at 790.526 kb on - strandat 790.527 kb on + strandat 790.654 kb on - strandat 790.661 kb on + strandat 790.684 kb on - strandat 790.708 kb on - strandat 790.712 kb on - strandat 790.736 kb on - strand, within MMP_RS04160at 790.736 kb on - strand, within MMP_RS04160at 790.736 kb on - strand, within MMP_RS04160at 790.737 kb on + strand, within MMP_RS04160at 790.737 kb on + strand, within MMP_RS04160at 790.737 kb on + strand, within MMP_RS04160at 790.737 kb on + strand, within MMP_RS04160at 790.738 kb on - strand, within MMP_RS04160at 790.739 kb on + strand, within MMP_RS04160at 790.765 kb on - strand, within MMP_RS04160at 790.864 kb on - strand, within MMP_RS04160at 790.865 kb on + strand, within MMP_RS04160at 790.865 kb on + strand, within MMP_RS04160at 790.907 kb on - strand, within MMP_RS04160at 790.908 kb on + strand, within MMP_RS04160at 790.910 kb on - strand, within MMP_RS04160at 790.910 kb on - strand, within MMP_RS04160at 790.911 kb on + strand, within MMP_RS04160at 790.911 kb on + strand, within MMP_RS04160at 790.927 kb on + strand, within MMP_RS04160at 790.931 kb on - strand, within MMP_RS04160at 790.931 kb on - strand, within MMP_RS04160at 790.967 kb on + strand, within MMP_RS04160at 790.967 kb on + strand, within MMP_RS04160at 790.976 kb on - strand, within MMP_RS04160at 790.977 kb on + strand, within MMP_RS04160at 790.986 kb on - strand, within MMP_RS04160at 790.994 kb on + strand, within MMP_RS04160at 791.007 kb on - strand, within MMP_RS04160at 791.008 kb on + strand, within MMP_RS04160at 791.104 kb on - strand, within MMP_RS04160at 791.105 kb on + strand, within MMP_RS04160at 791.122 kb on - strand, within MMP_RS04160at 791.147 kb on - strand, within MMP_RS04160at 791.148 kb on + strand, within MMP_RS04160at 791.217 kb on - strand, within MMP_RS04160at 791.234 kb on - strand, within MMP_RS04160at 791.241 kb on + strand, within MMP_RS04160at 791.283 kb on - strandat 791.293 kb on + strandat 791.305 kb on + strandat 791.305 kb on + strandat 791.307 kb on + strandat 791.307 kb on + strandat 791.323 kb on + strandat 791.347 kb on - strandat 791.349 kb on - strandat 791.356 kb on - strandat 791.357 kb on + strandat 791.389 kb on + strandat 791.443 kb on - strandat 791.444 kb on + strandat 791.445 kb on - strandat 791.446 kb on + strandat 791.446 kb on + strandat 791.501 kb on - strandat 791.504 kb on - strandat 791.513 kb on - strandat 791.514 kb on + strandat 791.517 kb on - strandat 791.521 kb on - strandat 791.552 kb on + strandat 791.566 kb on + strandat 791.569 kb on - strandat 791.569 kb on - strandat 791.570 kb on + strandat 791.582 kb on + strandat 791.590 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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788,404 - MMP_RS04150 0.24 -0.6
788,405 + MMP_RS04150 0.24 +0.5
788,468 - MMP_RS04150 0.29 -0.4
788,612 - MMP_RS04150 0.41 +0.2
788,821 - MMP_RS04150 0.58 +0.0
788,825 - MMP_RS04150 0.59 -0.1
788,825 - MMP_RS04150 0.59 +0.5
788,829 - MMP_RS04150 0.59 +0.3
788,830 + MMP_RS04150 0.59 -0.1
788,863 - MMP_RS04150 0.62 +1.4
789,056 - MMP_RS04150 0.78 -0.6
789,057 + MMP_RS04150 0.78 -0.1
789,230 - +0.2
789,311 - +0.1
789,324 - +0.1
789,334 + -0.2
789,339 - +0.2
789,340 + -0.6
789,340 + -0.1
789,340 + -0.1
789,340 + +0.5
789,404 - +0.0
789,404 - +0.3
789,429 + -0.5
789,490 + +0.4
789,496 - -0.1
789,497 + +0.0
789,511 + MMP_RS04155 0.10 +0.1
789,516 - MMP_RS04155 0.11 +0.1
789,517 + MMP_RS04155 0.11 +0.2
789,517 + MMP_RS04155 0.11 +0.2
789,550 - MMP_RS04155 0.14 -0.7
789,551 + MMP_RS04155 0.14 +0.0
789,551 + MMP_RS04155 0.14 -0.1
789,558 + MMP_RS04155 0.14 +0.2
789,566 - MMP_RS04155 0.15 -0.1
789,567 + MMP_RS04155 0.15 +0.2
789,567 + MMP_RS04155 0.15 -0.3
789,631 + MMP_RS04155 0.20 -0.3
789,662 - MMP_RS04155 0.23 +1.0
789,663 + MMP_RS04155 0.23 -0.1
789,663 + MMP_RS04155 0.23 -0.4
789,670 - MMP_RS04155 0.24 +0.0
789,671 + MMP_RS04155 0.24 +0.2
789,747 - MMP_RS04155 0.30 +0.0
789,748 + MMP_RS04155 0.30 +0.8
789,748 + MMP_RS04155 0.30 +0.0
789,754 - MMP_RS04155 0.31 +0.1
789,754 - MMP_RS04155 0.31 +0.3
789,754 - MMP_RS04155 0.31 -0.3
789,755 + MMP_RS04155 0.31 +0.2
789,755 + MMP_RS04155 0.31 +0.0
789,755 + MMP_RS04155 0.31 +0.6
789,757 + MMP_RS04155 0.31 -0.2
789,894 + MMP_RS04155 0.42 +0.1
789,895 - MMP_RS04155 0.42 -0.3
789,896 + MMP_RS04155 0.42 +0.1
789,896 + MMP_RS04155 0.42 -0.1
789,897 - MMP_RS04155 0.42 +0.3
789,897 - MMP_RS04155 0.42 -0.1
789,897 - MMP_RS04155 0.42 +0.2
789,903 + MMP_RS04155 0.43 +0.1
790,123 + MMP_RS04155 0.61 -0.2
790,228 + MMP_RS04155 0.70 -0.2
790,266 - MMP_RS04155 0.73 +0.0
790,270 - MMP_RS04155 0.73 +1.1
790,418 + MMP_RS04155 0.86 +0.5
790,419 - MMP_RS04155 0.86 -0.0
790,420 + MMP_RS04155 0.86 +0.6
790,424 - MMP_RS04155 0.86 -0.2
790,452 - MMP_RS04155 0.88 -0.6
790,452 - MMP_RS04155 0.88 -0.1
790,453 + MMP_RS04155 0.89 -0.0
790,526 - -0.6
790,527 + -0.2
790,654 - +0.2
790,661 + -0.0
790,684 - +0.0
790,708 - +0.2
790,712 - +0.2
790,736 - MMP_RS04160 0.11 -0.4
790,736 - MMP_RS04160 0.11 +0.1
790,736 - MMP_RS04160 0.11 -0.0
790,737 + MMP_RS04160 0.11 +0.1
790,737 + MMP_RS04160 0.11 +0.2
790,737 + MMP_RS04160 0.11 +0.4
790,737 + MMP_RS04160 0.11 -0.1
790,738 - MMP_RS04160 0.11 -0.3
790,739 + MMP_RS04160 0.12 -0.3
790,765 - MMP_RS04160 0.15 +0.3
790,864 - MMP_RS04160 0.30 -0.3
790,865 + MMP_RS04160 0.30 +0.7
790,865 + MMP_RS04160 0.30 -0.7
790,907 - MMP_RS04160 0.37 +0.3
790,908 + MMP_RS04160 0.37 -0.4
790,910 - MMP_RS04160 0.37 +0.2
790,910 - MMP_RS04160 0.37 -0.0
790,911 + MMP_RS04160 0.37 -0.2
790,911 + MMP_RS04160 0.37 -0.2
790,927 + MMP_RS04160 0.40 -0.4
790,931 - MMP_RS04160 0.40 -0.1
790,931 - MMP_RS04160 0.40 -0.4
790,967 + MMP_RS04160 0.46 +0.6
790,967 + MMP_RS04160 0.46 -0.3
790,976 - MMP_RS04160 0.47 -0.3
790,977 + MMP_RS04160 0.47 +0.1
790,986 - MMP_RS04160 0.48 -0.1
790,994 + MMP_RS04160 0.50 +0.5
791,007 - MMP_RS04160 0.52 +0.6
791,008 + MMP_RS04160 0.52 +0.3
791,104 - MMP_RS04160 0.66 -0.0
791,105 + MMP_RS04160 0.66 +0.8
791,122 - MMP_RS04160 0.69 -1.2
791,147 - MMP_RS04160 0.72 -0.2
791,148 + MMP_RS04160 0.73 -0.0
791,217 - MMP_RS04160 0.83 +0.2
791,234 - MMP_RS04160 0.86 -0.1
791,241 + MMP_RS04160 0.87 +0.3
791,283 - +0.5
791,293 + -0.4
791,305 + +0.1
791,305 + +0.2
791,307 + -0.0
791,307 + +0.1
791,323 + -0.3
791,347 - +0.1
791,349 - +0.1
791,356 - +0.6
791,357 + -0.6
791,389 + +0.1
791,443 - +0.9
791,444 + -0.2
791,445 - +0.1
791,446 + -0.0
791,446 + +0.3
791,501 - +0.6
791,504 - +0.2
791,513 - +0.1
791,514 + -0.1
791,517 - +0.2
791,521 - -0.3
791,552 + +0.2
791,566 + +0.2
791,569 - -0.5
791,569 - +0.0
791,570 + -0.0
791,582 + +0.1
791,590 + +0.0

Or see this region's nucleotide sequence