Strain Fitness in Methanococcus maripaludis S2 around MMP_RS04090

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS04085 and MMP_RS04090 overlap by 23 nucleotidesMMP_RS04090 and MMP_RS04095 are separated by 103 nucleotides MMP_RS04085: MMP_RS04085 - hypothetical protein, at 773,799 to 775,298 _RS04085 MMP_RS04090: MMP_RS04090 - hypothetical protein, at 775,276 to 775,686 _RS04090 MMP_RS04095: MMP_RS04095 - serine protease, at 775,790 to 776,566 _RS04095 Position (kb) 775 776Strain fitness (log2 ratio) -1 0 1at 774.277 kb on - strand, within MMP_RS04085at 774.277 kb on - strand, within MMP_RS04085at 774.283 kb on - strand, within MMP_RS04085at 774.283 kb on - strand, within MMP_RS04085at 774.284 kb on + strand, within MMP_RS04085at 774.284 kb on + strand, within MMP_RS04085at 774.295 kb on - strand, within MMP_RS04085at 774.296 kb on + strand, within MMP_RS04085at 774.329 kb on - strand, within MMP_RS04085at 774.563 kb on - strand, within MMP_RS04085at 774.582 kb on - strand, within MMP_RS04085at 774.615 kb on - strand, within MMP_RS04085at 774.655 kb on - strand, within MMP_RS04085at 774.732 kb on - strand, within MMP_RS04085at 774.857 kb on - strand, within MMP_RS04085at 774.887 kb on - strand, within MMP_RS04085at 774.890 kb on + strand, within MMP_RS04085at 774.918 kb on - strand, within MMP_RS04085at 774.918 kb on - strand, within MMP_RS04085at 774.918 kb on - strand, within MMP_RS04085at 774.918 kb on - strand, within MMP_RS04085at 774.918 kb on - strand, within MMP_RS04085at 774.918 kb on - strand, within MMP_RS04085at 774.919 kb on + strand, within MMP_RS04085at 774.919 kb on + strand, within MMP_RS04085at 774.919 kb on + strand, within MMP_RS04085at 774.920 kb on - strand, within MMP_RS04085at 774.920 kb on - strand, within MMP_RS04085at 774.959 kb on - strand, within MMP_RS04085at 774.967 kb on - strand, within MMP_RS04085at 774.973 kb on + strand, within MMP_RS04085at 774.975 kb on + strand, within MMP_RS04085at 774.998 kb on - strand, within MMP_RS04085at 775.175 kb on + strandat 775.196 kb on - strandat 775.196 kb on - strandat 775.201 kb on - strandat 775.286 kb on - strandat 775.369 kb on - strand, within MMP_RS04090at 775.448 kb on - strand, within MMP_RS04090at 775.449 kb on + strand, within MMP_RS04090at 775.600 kb on + strand, within MMP_RS04090at 775.605 kb on - strand, within MMP_RS04090at 775.670 kb on - strandat 775.684 kb on - strandat 775.685 kb on + strandat 775.689 kb on - strandat 775.717 kb on + strandat 775.757 kb on - strandat 775.757 kb on - strandat 775.761 kb on - strandat 775.774 kb on + strandat 775.785 kb on - strandat 775.786 kb on + strandat 775.802 kb on + strandat 776.027 kb on - strand, within MMP_RS04095at 776.027 kb on - strand, within MMP_RS04095at 776.028 kb on + strand, within MMP_RS04095at 776.031 kb on - strand, within MMP_RS04095at 776.070 kb on - strand, within MMP_RS04095at 776.071 kb on + strand, within MMP_RS04095at 776.073 kb on - strand, within MMP_RS04095at 776.114 kb on + strand, within MMP_RS04095at 776.140 kb on + strand, within MMP_RS04095at 776.217 kb on - strand, within MMP_RS04095at 776.218 kb on + strand, within MMP_RS04095at 776.218 kb on + strand, within MMP_RS04095at 776.239 kb on - strand, within MMP_RS04095at 776.260 kb on - strand, within MMP_RS04095at 776.290 kb on - strand, within MMP_RS04095at 776.296 kb on - strand, within MMP_RS04095at 776.297 kb on + strand, within MMP_RS04095at 776.325 kb on - strand, within MMP_RS04095at 776.326 kb on + strand, within MMP_RS04095at 776.326 kb on + strand, within MMP_RS04095at 776.346 kb on + strand, within MMP_RS04095at 776.368 kb on - strand, within MMP_RS04095at 776.400 kb on - strand, within MMP_RS04095at 776.400 kb on - strand, within MMP_RS04095at 776.510 kb on + strandat 776.522 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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774,277 - MMP_RS04085 0.32 +0.0
774,277 - MMP_RS04085 0.32 -0.0
774,283 - MMP_RS04085 0.32 +0.7
774,283 - MMP_RS04085 0.32 -0.6
774,284 + MMP_RS04085 0.32 +0.4
774,284 + MMP_RS04085 0.32 -0.6
774,295 - MMP_RS04085 0.33 -0.3
774,296 + MMP_RS04085 0.33 -0.3
774,329 - MMP_RS04085 0.35 -0.3
774,563 - MMP_RS04085 0.51 +0.5
774,582 - MMP_RS04085 0.52 +0.5
774,615 - MMP_RS04085 0.54 -0.1
774,655 - MMP_RS04085 0.57 -0.2
774,732 - MMP_RS04085 0.62 +0.1
774,857 - MMP_RS04085 0.71 +0.0
774,887 - MMP_RS04085 0.73 -0.2
774,890 + MMP_RS04085 0.73 +0.0
774,918 - MMP_RS04085 0.75 +0.2
774,918 - MMP_RS04085 0.75 +0.2
774,918 - MMP_RS04085 0.75 +0.4
774,918 - MMP_RS04085 0.75 -0.1
774,918 - MMP_RS04085 0.75 -0.4
774,918 - MMP_RS04085 0.75 +0.1
774,919 + MMP_RS04085 0.75 +0.0
774,919 + MMP_RS04085 0.75 +0.0
774,919 + MMP_RS04085 0.75 +0.6
774,920 - MMP_RS04085 0.75 +0.0
774,920 - MMP_RS04085 0.75 +0.3
774,959 - MMP_RS04085 0.77 -0.1
774,967 - MMP_RS04085 0.78 +0.0
774,973 + MMP_RS04085 0.78 -0.1
774,975 + MMP_RS04085 0.78 +0.1
774,998 - MMP_RS04085 0.80 +0.2
775,175 + -0.1
775,196 - +0.3
775,196 - +0.6
775,201 - +0.5
775,286 - +0.1
775,369 - MMP_RS04090 0.23 -0.1
775,448 - MMP_RS04090 0.42 -0.1
775,449 + MMP_RS04090 0.42 -1.2
775,600 + MMP_RS04090 0.79 +0.1
775,605 - MMP_RS04090 0.80 -0.9
775,670 - -0.1
775,684 - +0.1
775,685 + -0.3
775,689 - -0.1
775,717 + +0.3
775,757 - -0.3
775,757 - -0.0
775,761 - -0.1
775,774 + -0.6
775,785 - +0.1
775,786 + +0.3
775,802 + -0.1
776,027 - MMP_RS04095 0.31 +0.2
776,027 - MMP_RS04095 0.31 -0.1
776,028 + MMP_RS04095 0.31 +0.2
776,031 - MMP_RS04095 0.31 -0.1
776,070 - MMP_RS04095 0.36 +0.3
776,071 + MMP_RS04095 0.36 +0.3
776,073 - MMP_RS04095 0.36 -0.4
776,114 + MMP_RS04095 0.42 +0.0
776,140 + MMP_RS04095 0.45 +0.1
776,217 - MMP_RS04095 0.55 -0.3
776,218 + MMP_RS04095 0.55 +1.4
776,218 + MMP_RS04095 0.55 +0.2
776,239 - MMP_RS04095 0.58 -0.4
776,260 - MMP_RS04095 0.60 -0.0
776,290 - MMP_RS04095 0.64 +0.4
776,296 - MMP_RS04095 0.65 -0.5
776,297 + MMP_RS04095 0.65 -0.6
776,325 - MMP_RS04095 0.69 +0.2
776,326 + MMP_RS04095 0.69 -0.1
776,326 + MMP_RS04095 0.69 +0.6
776,346 + MMP_RS04095 0.72 +0.1
776,368 - MMP_RS04095 0.74 +0.0
776,400 - MMP_RS04095 0.79 -0.3
776,400 - MMP_RS04095 0.79 +0.0
776,510 + +0.6
776,522 + -0.3

Or see this region's nucleotide sequence