Strain Fitness in Methanococcus maripaludis S2 around MMP_RS03995

Experiment: Formate McCas no stress control 2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMMP_RS03990 and MMP_RS03995 are separated by 163 nucleotidesMMP_RS03995 and MMP_RS04000 are separated by 7 nucleotides MMP_RS03990: MMP_RS03990 - recombinase family protein, at 756,454 to 757,008 _RS03990 MMP_RS03995: MMP_RS03995 - flippase-like domain-containing protein, at 757,172 to 758,122 _RS03995 MMP_RS04000: MMP_RS04000 - NAD(P)/FAD-dependent oxidoreductase, at 758,130 to 759,548 _RS04000 Position (kb) 757 758 759Strain fitness (log2 ratio) -2 -1 0 1at 756.203 kb on + strandat 756.209 kb on + strandat 756.267 kb on - strandat 756.305 kb on + strandat 756.339 kb on + strandat 756.371 kb on + strandat 756.391 kb on - strandat 756.392 kb on + strandat 756.455 kb on - strandat 756.455 kb on - strandat 756.456 kb on + strandat 756.473 kb on - strandat 756.477 kb on - strandat 756.653 kb on + strand, within MMP_RS03990at 756.768 kb on - strand, within MMP_RS03990at 756.835 kb on + strand, within MMP_RS03990at 756.837 kb on - strand, within MMP_RS03990at 756.840 kb on - strand, within MMP_RS03990at 756.853 kb on - strand, within MMP_RS03990at 756.894 kb on - strand, within MMP_RS03990at 756.894 kb on - strand, within MMP_RS03990at 756.895 kb on + strand, within MMP_RS03990at 756.895 kb on + strand, within MMP_RS03990at 756.942 kb on - strand, within MMP_RS03990at 756.981 kb on - strandat 756.982 kb on + strandat 756.982 kb on + strandat 757.008 kb on - strandat 757.008 kb on - strandat 757.009 kb on + strandat 757.057 kb on - strandat 757.081 kb on - strandat 757.081 kb on - strandat 757.082 kb on + strandat 757.166 kb on + strandat 757.166 kb on + strandat 757.226 kb on + strandat 757.374 kb on + strand, within MMP_RS03995at 757.374 kb on + strand, within MMP_RS03995at 757.399 kb on - strand, within MMP_RS03995at 757.434 kb on - strand, within MMP_RS03995at 757.434 kb on - strand, within MMP_RS03995at 757.434 kb on - strand, within MMP_RS03995at 757.435 kb on + strand, within MMP_RS03995at 757.435 kb on + strand, within MMP_RS03995at 757.435 kb on + strand, within MMP_RS03995at 757.441 kb on - strand, within MMP_RS03995at 757.555 kb on - strand, within MMP_RS03995at 757.616 kb on - strand, within MMP_RS03995at 757.671 kb on + strand, within MMP_RS03995at 757.672 kb on - strand, within MMP_RS03995at 757.673 kb on + strand, within MMP_RS03995at 757.727 kb on - strand, within MMP_RS03995at 757.797 kb on + strand, within MMP_RS03995at 758.006 kb on + strand, within MMP_RS03995at 758.012 kb on - strand, within MMP_RS03995at 758.023 kb on + strand, within MMP_RS03995at 758.055 kb on + strandat 758.082 kb on - strandat 758.083 kb on + strandat 758.083 kb on + strandat 758.194 kb on - strandat 758.239 kb on - strandat 758.240 kb on + strandat 758.261 kb on - strandat 758.261 kb on - strandat 758.261 kb on - strandat 758.262 kb on + strandat 758.313 kb on - strand, within MMP_RS04000at 758.317 kb on - strand, within MMP_RS04000at 758.334 kb on - strand, within MMP_RS04000at 758.481 kb on + strand, within MMP_RS04000at 758.575 kb on + strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.614 kb on - strand, within MMP_RS04000at 758.615 kb on + strand, within MMP_RS04000at 758.641 kb on + strand, within MMP_RS04000at 758.646 kb on + strand, within MMP_RS04000at 758.646 kb on + strand, within MMP_RS04000at 758.655 kb on - strand, within MMP_RS04000at 758.828 kb on - strand, within MMP_RS04000at 758.829 kb on + strand, within MMP_RS04000at 758.835 kb on + strand, within MMP_RS04000at 758.841 kb on - strand, within MMP_RS04000at 758.844 kb on + strand, within MMP_RS04000at 758.903 kb on + strand, within MMP_RS04000at 759.082 kb on - strand, within MMP_RS04000at 759.083 kb on + strand, within MMP_RS04000at 759.083 kb on + strand, within MMP_RS04000at 759.103 kb on - strand, within MMP_RS04000at 759.103 kb on - strand, within MMP_RS04000

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Per-strain Table

Position Strand Gene LocusTag Fraction Formate McCas no stress control 2
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756,203 + +0.9
756,209 + -0.1
756,267 - +0.2
756,305 + -0.0
756,339 + +0.1
756,371 + -0.0
756,391 - +0.2
756,392 + -0.1
756,455 - +0.4
756,455 - -0.0
756,456 + +0.1
756,473 - +0.4
756,477 - -0.0
756,653 + MMP_RS03990 0.36 -0.6
756,768 - MMP_RS03990 0.57 -0.4
756,835 + MMP_RS03990 0.69 +0.8
756,837 - MMP_RS03990 0.69 +0.5
756,840 - MMP_RS03990 0.70 +0.2
756,853 - MMP_RS03990 0.72 -0.3
756,894 - MMP_RS03990 0.79 +0.1
756,894 - MMP_RS03990 0.79 -0.5
756,895 + MMP_RS03990 0.79 -0.1
756,895 + MMP_RS03990 0.79 +0.5
756,942 - MMP_RS03990 0.88 +0.8
756,981 - +0.4
756,982 + -0.1
756,982 + -0.4
757,008 - -0.0
757,008 - -0.1
757,009 + +0.0
757,057 - -0.1
757,081 - -0.3
757,081 - -0.2
757,082 + +0.2
757,166 + -0.4
757,166 + -0.1
757,226 + +0.3
757,374 + MMP_RS03995 0.21 -0.7
757,374 + MMP_RS03995 0.21 +0.1
757,399 - MMP_RS03995 0.24 +0.3
757,434 - MMP_RS03995 0.28 -0.1
757,434 - MMP_RS03995 0.28 -0.5
757,434 - MMP_RS03995 0.28 +0.3
757,435 + MMP_RS03995 0.28 -0.1
757,435 + MMP_RS03995 0.28 +0.1
757,435 + MMP_RS03995 0.28 -0.1
757,441 - MMP_RS03995 0.28 -0.1
757,555 - MMP_RS03995 0.40 +0.3
757,616 - MMP_RS03995 0.47 +0.4
757,671 + MMP_RS03995 0.52 -0.2
757,672 - MMP_RS03995 0.53 -0.1
757,673 + MMP_RS03995 0.53 -0.0
757,727 - MMP_RS03995 0.58 -0.0
757,797 + MMP_RS03995 0.66 -0.3
758,006 + MMP_RS03995 0.88 -0.1
758,012 - MMP_RS03995 0.88 +0.9
758,023 + MMP_RS03995 0.89 +0.1
758,055 + -0.5
758,082 - -0.1
758,083 + +0.4
758,083 + +0.2
758,194 - -0.2
758,239 - +0.2
758,240 + -0.5
758,261 - -0.2
758,261 - -0.1
758,261 - +0.6
758,262 + -0.4
758,313 - MMP_RS04000 0.13 -0.1
758,317 - MMP_RS04000 0.13 -0.1
758,334 - MMP_RS04000 0.14 +0.4
758,481 + MMP_RS04000 0.25 -0.1
758,575 + MMP_RS04000 0.31 +0.2
758,614 - MMP_RS04000 0.34 +0.1
758,614 - MMP_RS04000 0.34 +1.2
758,614 - MMP_RS04000 0.34 -0.0
758,615 + MMP_RS04000 0.34 -0.0
758,641 + MMP_RS04000 0.36 -0.3
758,646 + MMP_RS04000 0.36 -0.2
758,646 + MMP_RS04000 0.36 +0.2
758,655 - MMP_RS04000 0.37 +0.3
758,828 - MMP_RS04000 0.49 -0.6
758,829 + MMP_RS04000 0.49 -1.8
758,835 + MMP_RS04000 0.50 +0.1
758,841 - MMP_RS04000 0.50 -0.6
758,844 + MMP_RS04000 0.50 -0.2
758,903 + MMP_RS04000 0.54 -0.1
759,082 - MMP_RS04000 0.67 +0.3
759,083 + MMP_RS04000 0.67 +0.1
759,083 + MMP_RS04000 0.67 +0.0
759,103 - MMP_RS04000 0.69 +0.7
759,103 - MMP_RS04000 0.69 -0.2

Or see this region's nucleotide sequence